Thanks Luis for your quick response. Finally, I could resolve the problem. As a beginner user, I made a mistake with Comet params. Thanks again for your attention and support.
kind regards, Felipe El vie, 28 abr 2023 a las 16:14, 'Luis Mendoza' via spctools-discuss (< [email protected]>) escribió: > Hello Felipe, > > The top message seems to indicate a permissions error; perhaps the files > under /tmp are not accessible to the Apache/web user? Since this looks > like a Linux install, it depends on how that part of your system is set up. > > The large error may or may not be related to the previous one, but it is > telling you that the pepXML file is not valid PepXML. There can be many > reasons for this, so it depends on how that file was initially generated. > > What steps did you take to go from your Thermo raw file to this pepXML? > Do you get any other errors or warnings before this step? Have you been > able to run other data as a test of your TPP install? > > Cheers, > --Luis > > > On Fri, Apr 28, 2023 at 11:25 AM felipe velasquez <[email protected]> > wrote: > >> Hello luis, thanks. >> >> [image: image.png] >> >> >> This is one of the messages... there is something I can do to fix it? >> >> Thanks again, >> >> Felipe >> >> El vie, 28 abr 2023 a las 4:58, 'Luis Mendoza' via spctools-discuss (< >> [email protected]>) escribió: >> >>> Hello Felipe, >>> >>> It is in general not normal to not find "any results" with TPP when >>> other platforms do find some, as there is often partial, if not >>> significant, overlap. Typically when no results are found, it points to >>> either bad data (presumably not in this case) or incorrect parameters >>> (including choice of database if doing sequence searching). >>> >>> For your specific case, we would need to know more specifics if you are >>> looking for help in your TPP analysis -- e.g. what kind of data you have, >>> what components are you using, what parameters were set, etc. >>> >>> We do note that in some instances other software does tend to inflate >>> the number of results provided to the user, albeit with either a very high >>> or otherwise poorly characterized error rate. >>> >>> Again, without knowing specifics, it is impossible to tell what could be >>> going on. >>> >>> Cheers, >>> --Luis >>> >>> >>> On Thu, Apr 27, 2023 at 8:04 PM felipe velasquez <[email protected]> >>> wrote: >>> >>>> hello again >>>> >>>> I am trying to analyze some samples from thermo raw data, but I cannot >>>> find any results. However, another person analyzed the same data using >>>> another platform and found some results. Is this normal? >>>> >>>> >>>> Felipe >>>> >>>> -- >>>> You received this message because you are subscribed to the Google >>>> Groups "spctools-discuss" group. >>>> To unsubscribe from this group and stop receiving emails from it, send >>>> an email to [email protected]. >>>> To view this discussion on the web visit >>>> https://groups.google.com/d/msgid/spctools-discuss/CAA35R_UNFxZW6Jw-AwszcqWP3OkxGH-BN0-tqwKn9cPLJrXyPA%40mail.gmail.com >>>> <https://groups.google.com/d/msgid/spctools-discuss/CAA35R_UNFxZW6Jw-AwszcqWP3OkxGH-BN0-tqwKn9cPLJrXyPA%40mail.gmail.com?utm_medium=email&utm_source=footer> >>>> . >>>> >>> -- >>> You received this message because you are subscribed to the Google >>> Groups "spctools-discuss" group. >>> To unsubscribe from this group and stop receiving emails from it, send >>> an email to [email protected]. >>> To view this discussion on the web visit >>> https://groups.google.com/d/msgid/spctools-discuss/CACyS9brgCbLHV3VE%2BPL3RjxxRKXdpW6NvfK%2BFSqXfuPVtk-0OA%40mail.gmail.com >>> <https://groups.google.com/d/msgid/spctools-discuss/CACyS9brgCbLHV3VE%2BPL3RjxxRKXdpW6NvfK%2BFSqXfuPVtk-0OA%40mail.gmail.com?utm_medium=email&utm_source=footer> >>> . >>> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected]. >> To view this discussion on the web visit >> https://groups.google.com/d/msgid/spctools-discuss/CAA35R_WuC6H84Db2%3DOtD_Qt%2B4zuqrwJ47L%2Beq%2Btef86dW6cxrw%40mail.gmail.com >> <https://groups.google.com/d/msgid/spctools-discuss/CAA35R_WuC6H84Db2%3DOtD_Qt%2B4zuqrwJ47L%2Beq%2Btef86dW6cxrw%40mail.gmail.com?utm_medium=email&utm_source=footer> >> . >> > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To view this discussion on the web visit > https://groups.google.com/d/msgid/spctools-discuss/CACyS9br94H7s1%2B-FcLpTmDs5-qBbn3ridNumF9mHearWPP%2BdYQ%40mail.gmail.com > <https://groups.google.com/d/msgid/spctools-discuss/CACyS9br94H7s1%2B-FcLpTmDs5-qBbn3ridNumF9mHearWPP%2BdYQ%40mail.gmail.com?utm_medium=email&utm_source=footer> > . > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. 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