Dear Sud, I was able to process your dataset! Although, I am still working on getting a faster version of ASAPRatio compiled for your testing purposes. Meanwhile you can help the process by filtering your files so that zero intensity peaks in the MS1 data are removed and the MS1 data is centroided. You can accomplish both of these things using the msconvert tool. This will help reduce the time requirement to process this dataset. I should have more to say about this particular case in the next few days.
Cheers! -David > On Nov 29, 2023, at 10:17 AM, sudarshan kumar <kumarsuders...@gmail.com> > wrote: > > Hi David, > could you get time to see into my analysis? I need your advice. > Best regards, > Sud > > On Wed, Nov 22, 2023 at 3:51 PM 'David Shteynberg' via spctools-discuss > <spctools-discuss@googlegroups.com > <mailto:spctools-discuss@googlegroups.com>> wrote: >> Hello Sudarshan, >> >> Please zip this directory on your system: >> c:/TPP/data/SILAC/Comet_SILAC/Comet_silac_param >> >> Then upload the zip file to your favorite cloud server and share the link >> with me. >> >> Thanks! >> -David >> >> On Wed, Nov 22, 2023 at 3:17 PM sudarshan kumar <kumarsuders...@gmail.com >> <mailto:kumarsuders...@gmail.com>> wrote: >>> EXECUTING: cd c:/TPP/data/SILAC/Comet_SILAC/Comet_silac_param && c: && >>> C:/TPP/bin/xinteract -Ninteract_silaccomtwofiles.pep.xml -p0.0 -l6 >>> -THREADS=1 -PPM -OA -ipP -X-m0.1-c5-p1-L-nR,10.008269-nK,8.014199 >>> -A-lRK-F-C-Z-r0.05 110623_Silac_TEST_01.pep.xml >>> 110623_Sud_LH_TEST_02.pep.xml >>> >>> On Wed, Nov 22, 2023 at 3:07 PM sudarshan kumar <kumarsuders...@gmail.com >>> <mailto:kumarsuders...@gmail.com>> wrote: >>>> Thank you so much David, >>>> But can you tell me how can i compress? Do you mean this link? >>>> (6) ISB/SPC Trans Proteomic Pipeline :: jobs >>>> <http://localhost:10401/tpp/cgi-bin/tpp_gui.pl?Action=display&page=jobs&show_job=HGYB4F2HW2_20231120-150857> >>>> >>>> On Wed, Nov 22, 2023 at 2:31 PM 'David Shteynberg' via spctools-discuss >>>> <spctools-discuss@googlegroups.com >>>> <mailto:spctools-discuss@googlegroups.com>> wrote: >>>>> Dear Sudarshan, >>>>> >>>>> It is hard to say why this particular execution resulted in apparent >>>>> failure, but if you are willing to compress the whole directory of this >>>>> analysis and send me a download link, I would be happy to download this >>>>> dataset and check why it failed. >>>>> >>>>> Cheers! >>>>> -David >>>>> >>>>> On Wed, Nov 22, 2023 at 12:04 PM sudarshan kumar >>>>> <kumarsuders...@gmail.com <mailto:kumarsuders...@gmail.com>> wrote: >>>>>> Can anyone please help me know, why when I am running express and >>>>>> ASAPratio it always takes more than two days time and though express is >>>>>> completed but after running for around 80% in asapratio it stucks and >>>>>> shows only the running status but nothing moves ahead. <Screenshot >>>>>> 2023-11-22 120242.png> >>>>>> >>>>>> >>>>>> >>>>>> -- >>>>>> You received this message because you are subscribed to the Google >>>>>> Groups "spctools-discuss" group. >>>>>> To unsubscribe from this group and stop receiving emails from it, send >>>>>> an email to spctools-discuss+unsubscr...@googlegroups.com >>>>>> <mailto:spctools-discuss+unsubscr...@googlegroups.com>. >>>>>> To view this discussion on the web visit >>>>>> https://groups.google.com/d/msgid/spctools-discuss/a1b10bac-e49a-429f-a255-500332721e7fn%40googlegroups.com >>>>>> >>>>>> <https://groups.google.com/d/msgid/spctools-discuss/a1b10bac-e49a-429f-a255-500332721e7fn%40googlegroups.com?utm_medium=email&utm_source=footer>. >>>>> >>>>> >>>>> -- >>>>> You received this message because you are subscribed to the Google Groups >>>>> "spctools-discuss" group. >>>>> To unsubscribe from this group and stop receiving emails from it, send an >>>>> email to spctools-discuss+unsubscr...@googlegroups.com >>>>> <mailto:spctools-discuss+unsubscr...@googlegroups.com>. >>>>> To view this discussion on the web visit >>>>> https://groups.google.com/d/msgid/spctools-discuss/CAGJJY%3D8LhUKQ0CgKHSA55wddG9HwYASJNYKwXfvRYLCEXr0y2w%40mail.gmail.com >>>>> >>>>> <https://groups.google.com/d/msgid/spctools-discuss/CAGJJY%3D8LhUKQ0CgKHSA55wddG9HwYASJNYKwXfvRYLCEXr0y2w%40mail.gmail.com?utm_medium=email&utm_source=footer>. >>>> >>>> >>>> -- >>>> ------------------------------------------------------------------- >>>> The real voyage of discovery consists not in seeking new lands but seeing >>>> with new eyes. — Marcel Proust >>>> >>>> Dr. Sudarshan Kumar >>>> (Fulbright-Nehru Fellow) >>>> (B.V.Sc.& A.H., M.V.Sc <http://m.v.sc/>., PhD.) >>>> Sr. Scientist >>>> Animal Biotechnology Center >>>> (Proteomics and Cell Biology Lab.) >>>> National Dairy Research Institute Karnal, 132001 >>>> Haryana, India >>>> Contact No 09254912456 >>>> URL www.ndri.res.in <http://www.ndri.res.in/> >>>> Orcid Id: https://orcid.org/0000-0002-9816-4307 >>>> >>> >>> >>> -- >>> ------------------------------------------------------------------- >>> The real voyage of discovery consists not in seeking new lands but seeing >>> with new eyes. — Marcel Proust >>> >>> Dr. Sudarshan Kumar >>> (Fulbright-Nehru Fellow) >>> (B.V.Sc.& A.H., M.V.Sc <http://m.v.sc/>., PhD.) >>> Sr. Scientist >>> Animal Biotechnology Center >>> (Proteomics and Cell Biology Lab.) >>> National Dairy Research Institute Karnal, 132001 >>> Haryana, India >>> Contact No 09254912456 >>> URL www.ndri.res.in <http://www.ndri.res.in/> >>> Orcid Id: https://orcid.org/0000-0002-9816-4307 >>> >>> >>> -- >>> You received this message because you are subscribed to the Google Groups >>> "spctools-discuss" group. >>> To unsubscribe from this group and stop receiving emails from it, send an >>> email to spctools-discuss+unsubscr...@googlegroups.com >>> <mailto:spctools-discuss+unsubscr...@googlegroups.com>. >>> To view this discussion on the web visit >>> https://groups.google.com/d/msgid/spctools-discuss/CALZrgHT-jhN6BGkYap6epaK-QjKmZ83ErBsvxmb%2BFR-TQs%3DpMA%40mail.gmail.com >>> >>> <https://groups.google.com/d/msgid/spctools-discuss/CALZrgHT-jhN6BGkYap6epaK-QjKmZ83ErBsvxmb%2BFR-TQs%3DpMA%40mail.gmail.com?utm_medium=email&utm_source=footer>. >> >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to spctools-discuss+unsubscr...@googlegroups.com >> <mailto:spctools-discuss+unsubscr...@googlegroups.com>. >> To view this discussion on the web visit >> https://groups.google.com/d/msgid/spctools-discuss/CAGJJY%3D_med6%3D2YdYkgF1XQ_vMTLRxd5AbNzHe4tnWQj%3D3uMZpg%40mail.gmail.com >> >> <https://groups.google.com/d/msgid/spctools-discuss/CAGJJY%3D_med6%3D2YdYkgF1XQ_vMTLRxd5AbNzHe4tnWQj%3D3uMZpg%40mail.gmail.com?utm_medium=email&utm_source=footer>. > > > -- > ------------------------------------------------------------------- > The real voyage of discovery consists not in seeking new lands but seeing > with new eyes. — Marcel Proust > > Dr. Sudarshan Kumar > (Fulbright-Nehru Fellow) > (B.V.Sc.& A.H., M.V.Sc <http://m.v.sc/>., PhD.) > Sr. Scientist > Animal Biotechnology Center > (Proteomics and Cell Biology Lab.) > National Dairy Research Institute Karnal, 132001 > Haryana, India > Contact No 09254912456 > URL www.ndri.res.in <http://www.ndri.res.in/> > Orcid Id: https://orcid.org/0000-0002-9816-4307 > > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to spctools-discuss+unsubscr...@googlegroups.com > 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