Hi Peter,
Can you confirm the contents of the /opt/xerces311/local/lib directory? Run, ls
-l /opt/xerces311/local/lib
The error you are getting is stating that it can't find the binary interfaces
to the functions used within the code, i.e., it can't find the library file.
You should have a file named libxerces-c.so on your system within the
/opt/xerces311/local/lib directory, which links to the libxerces-c-3.1.so file.
If not you need to update the path to where these do exist or reinstall
xerces-c. I think the library requires 3.1 if I remember correctly.
Let me know if you still have problems.
Best wishes,
Pete
****************************************************
* Dr Pete Bunting
* Senior Lecturer in Remote Sensing
* Institute of Geography and Earth Sciences
* Aberystwyth University
* Aberystwyth
* Ceredigion
* SY23 3DB
* UK
*
* Ph: +44 (0) 1970 622615
* Mob: +44 (0) 7917 842743
* NZ Ph: +64 (0) 4 280 7430
* Email: [email protected]
****************************************************
On 11 Apr 2013, at 15:38, Peter Wolynec <[email protected]> wrote:
>
> Hi Pete,
>
> Thank you for your reply.
> And apologies for the length of my emails.
>
> I deleted our copy of spdlib and downloaded again.
>
> I noticed that you declare GDAL - so I have declared that too
> in today's run.
>
> I have included below in Appendix A my instructions,
> and, in Appendix B, the last portion of the make.
>
> I am using -
>
> gcc-c++-4.4.6-4.el6.x86_64
> gcc-gfortran-4.4.6-4.el6.x86_64
> gcc-4.4.6-4.el6.x86_64
> libgcc-4.4.6-4.el6.x86_64
>
> I must confess that I have installed
>
> gdal-1.7.3-15.el6.x86_64
> gdal-devel-1.7.3-15.el6.x86_64
> gdal-java-1.7.3-15.el6.x86_64
> gdal-python-1.7.3-15.el6.x86_64
> xerces-c-3.0.1-0.20.1.el6.x86_64
> xerces-c-devel-3.0.1-0.20.1.el6.x86_64
>
> via yum - even though at -
>
> http://www.spdlib.org/doku.php?id=spdlib:general:installation:installation
>
> it states -
>
> Pitfalls
> When compiling libLAS with geotiff support be sure that GDAL and libLAS use
> the same geotiff library installation. By default GDAL using an internal
> build and if this is different to the version libLAS uses then a runtime
> linking error can be caused. The easiest and best solution is to install
> libgeotiff independently and then link both libLAS and GDAL (using
> –with-geotiff=$GEOTIFF_ROOT) to this installed version.
>
> I have another xerces-c version (3.1.1) in /opt - could there be confusion
> between the two xerces-c?
> With the older xerces-c the make for spdlib stopped earlier.
>
> Tomorrow, I will remove all the gdal and xerces-c packages and re-install
> from source gdal, liBLAS and spdlib.
>
> Unless you can think of something else?
>
> Regards,
> Peter.
>
> ---
> Appendix A
>
> hg clone https://bitbucket.org/petebunting/spdlib .
>
> cmake -D CMAKE_INSTALL_PREFIX=/opt/spdlib/local/hg \
> -D HDF5_INCLUDE_DIR=/usr/include \
> -D HDF5_LIB_PATH=/usr/lib64 \
> -D GSL_INCLUDE_DIR=/usr/include \
> -D GSL_LIB_PATH=/usr/lib64 \
> -D MPFR_INCLUDE_DIR=/usr/include \
> -D MPFR_LIB_PATH=/usr/lib64 \
> -D GMP_INCLUDE_DIR=/usr/include \
> -D GMP_LIB_PATH=/usr/lib64 \
> -D GDAL_INCLUDE_DIR=/usr/include/gdal \
> -D GDAL_LIB_DIR=/usr/lib64 \
> -D LIBLAS_INCLUDE_DIR=/opt/libLAS/local/include \
> -D LIBLAS_LIB_PATH=/opt/libLAS/local/lib \
> -D CGAL_INCLUDE_DIR=/opt/cgal/local/include \
> -D CGAL_LIB_PATH=/opt/cgal/local/lib \
> -D XERCESC_INCLUDE_DIR=/opt/xerces311/local/include \
> -D XERCESC_LIB_PATH=/opt/xerces311/local/lib \
> -D CMAKE_VERBOSE_MAKEFILE=ON \
> CMakeLists.txt
>
> echo $? # was 0
>
> make
>
> ---
> Appendix B
>
> <snip>
> [ 71%] Building CXX object
> CMakeFiles/spdclearclass.dir/src/exe/spdclearclass/main.cpp.o
> /usr/bin/c++ -fPIC -Wall -Wpointer-arith -Wcast-align -Wcast-qual
> -Wredundant-decls -Wno-long-long -DNDEBUG -std=c++98 -O3 -DNDEBUG
> -I/usr/include/gdal -I/opt/libLAS/local/include -I/opt/cgal/local/include
> -I/opt/xerces311/local/include -I/opt/spdlib/src/spdlib_hg/include -o
> CMakeFiles/spdclearclass.dir/src/exe/spdclearclass/main.cpp.o -c
> /opt/spdlib/src/spdlib_hg/src/exe/spdclearclass/main.cpp
> In file included from /usr/include/gdal/ogr_feature.h:34,
> from /usr/include/gdal/ogrsf_frmts.h:33,
> from
> /opt/spdlib/src/spdlib_hg/include/spd/SPDProcessDataBlocks.h:33,
> from
> /opt/spdlib/src/spdlib_hg/include/spd/SPDProcessPulses.h:37,
> from
> /opt/spdlib/src/spdlib_hg/include/spd/SPDCopyRemovingClassificationProcessor.h:38,
> from
> /opt/spdlib/src/spdlib_hg/src/exe/spdclearclass/main.cpp:31:
> /usr/include/gdal/ogr_featurestyle.h: In member function ‘const char*
> OGRStylePen::Pattern(GBool&)’:
> /usr/include/gdal/ogr_featurestyle.h:263: warning: cast from type ‘const
> char*’ to type ‘char*’ casts away constness
> In file included from
> /opt/spdlib/src/spdlib_hg/include/spd/SPDProcessDataBlocks.h:34,
> from
> /opt/spdlib/src/spdlib_hg/include/spd/SPDProcessPulses.h:37,
> from
> /opt/spdlib/src/spdlib_hg/include/spd/SPDCopyRemovingClassificationProcessor.h:38,
> from
> /opt/spdlib/src/spdlib_hg/src/exe/spdclearclass/main.cpp:31:
> /usr/include/gdal/ogr_api.h: At global scope:
> /usr/include/gdal/ogr_api.h:393: warning: redundant redeclaration of ‘void
> OGRRegisterAll()’ in same scope
> /usr/include/gdal/ogrsf_frmts.h:305: warning: previous declaration of ‘void
> OGRRegisterAll()’
> Linking CXX executable spdclearclass
> /usr/bin/cmake -E cmake_link_script CMakeFiles/spdclearclass.dir/link.txt
> --verbose=1
> /usr/bin/c++ -fPIC -Wall -Wpointer-arith -Wcast-align -Wcast-qual
> -Wredundant-decls -Wno-long-long -DNDEBUG -std=c++98 -O3 -DNDEBUG -fPIC
> CMakeFiles/spdclearclass.dir/src/exe/spdclearclass/main.cpp.o -o
> spdclearclass -rdynamic src/libspdio.so.3.0.0 src/libspd.so.3.0.0
> src/libspdio.so.3.0.0 -lgdal -L/usr/lib64 -lhdf5 -lhdf5_hl -lhdf5_cpp
> -L/opt/libLAS/local/lib -llas -llas_c -lgsl -lgslcblas -L/opt/cgal/local/lib
> -lCGAL -L/opt/xerces311/local/lib -lxerces-c -lgmp -lmpfr
> -Wl,-rpath,/opt/spdlib/src/spdlib_hg/src
> src/libspd.so.3.0.0: undefined reference to
> `xercesc_3_1::XMLAttDefList::serialize(xercesc_3_1::XSerializeEngine&)'
> src/libspd.so.3.0.0: undefined reference to
> `xercesc_3_1::DTDEntityDecl::isSerializable() const'
> src/libspd.so.3.0.0: undefined reference to
> `xercesc_3_1::SAXParseException::~SAXParseException()'
> src/libspd.so.3.0.0: undefined reference to
> `xercesc_3_1::DOMImplementationRegistry::getDOMImplementation(unsigned short
> const*)'
> src/libspd.so.3.0.0: undefined reference to `typeinfo for
> xercesc_3_1::SAXParseException'
> src/libspd.so.3.0.0: undefined reference to `xercesc_3_1::XMemory::operator
> delete(void*)'
> src/libspd.so.3.0.0: undefined reference to
> `xercesc_3_1::DTDEntityDecl::getProtoType() const'
> src/libspd.so.3.0.0: undefined reference to
> `xercesc_3_1::XMLUni::fgDOMErrorHandler'
> src/libspd.so.3.0.0: undefined reference to
> `xercesc_3_1::XMLString::release(char**, xercesc_3_1::MemoryManager*)'
> src/libspd.so.3.0.0: undefined reference to
> `xercesc_3_1::XMLAttDefList::isSerializable() const'
> src/libspd.so.3.0.0: undefined reference to `typeinfo for
> xercesc_3_1::XMLException'
> src/libspd.so.3.0.0: undefined reference to
> `xercesc_3_1::XMLPlatformUtils::Initialize(char const*, char const*,
> xercesc_3_1::PanicHandler*, xercesc_3_1::MemoryManager*)'
> src/libspd.so.3.0.0: undefined reference to
> `xercesc_3_1::XMLPlatformUtils::fgMemoryManager'
> src/libspd.so.3.0.0: undefined reference to `typeinfo for
> xercesc_3_1::XMLEntityDecl'
> src/libspd.so.3.0.0: undefined reference to
> `xercesc_3_1::DTDEntityDecl::serialize(xercesc_3_1::XSerializeEngine&)'
> src/libspd.so.3.0.0: undefined reference to
> `xercesc_3_1::XMLString::release(unsigned short**,
> xercesc_3_1::MemoryManager*)'
> src/libspd.so.3.0.0: undefined reference to
> `xercesc_3_1::XMLString::transcode(char const*, xercesc_3_1::MemoryManager*)'
> src/libspd.so.3.0.0: undefined reference to `typeinfo for
> xercesc_3_1::DOMException'
> src/libspd.so.3.0.0: undefined reference to
> `xercesc_3_1::XMLPlatformUtils::Terminate()'
> src/libspd.so.3.0.0: undefined reference to
> `xercesc_3_1::XMLEntityDecl::~XMLEntityDecl()'
> src/libspd.so.3.0.0: undefined reference to
> `xercesc_3_1::SAXParseException::SAXParseException(xercesc_3_1::SAXParseException
> const&)'
> src/libspd.so.3.0.0: undefined reference to
> `xercesc_3_1::XMLAttDefList::getProtoType() const'
> src/libspd.so.3.0.0: undefined reference to
> `xercesc_3_1::XMLString::transcode(unsigned short const*,
> xercesc_3_1::MemoryManager*)'
> src/libspd.so.3.0.0: undefined reference to
> `xercesc_3_1::XMLUni::fgXercescDefaultLocale'
> src/libspd.so.3.0.0: undefined reference to
> `xercesc_3_1::XMLString::transcode(char const*, unsigned short*, unsigned
> long, xercesc_3_1::MemoryManager*)'
> collect2: ld returned 1 exit status
> make[2]: *** [spdclearclass] Error 1
> make[2]: Leaving directory `/opt/spdlib/src/spdlib_hg'
> make[1]: *** [CMakeFiles/spdclearclass.dir/all] Error 2
> make[1]: Leaving directory `/opt/spdlib/src/spdlib_hg'
> make: *** [all] Error 2
> ---
>
>
>
> On 10 April 2013 20:58, Peter Bunting <[email protected]> wrote:
> Hi Peter,
>
> Thanks for your email.
>
> First of all, at the end of last week I moved the spdlib repository to
> bitbucket and haven't had chance to update the website yet. The new URL is,
> there have already been a couple of commits so would recommend you download
> from there:
>
> hg clone https://bitbucket.org/petebunting/spdlib spdlib-20130407
>
> With regards to your question I also have my libraries in non-standard
> locations and have variables setup to their locations so I use the following
> cmake command to specify the locations. At the moment the cmake script will
> only find libraries automatically if they are installed in /usr/local and
> anywhere else they need to be specified as below:
>
> cmake -D CMAKE_INSTALL_PREFIX=/share/osgeo/fw/spdlib/20130407 \
> -D HDF5_INCLUDE_DIR=$HDF5_INCLUDE_PATH \
> -D HDF5_LIB_PATH=$HDF5_LIB_PATH \
> -D LIBLAS_INCLUDE_DIR=$LIBLAS_INCLUDE_PATH \
> -D LIBLAS_LIB_PATH=$LIBLAS_LIB_PATH \
> -D GSL_INCLUDE_DIR=$GSL_INCLUDE_PATH \
> -D GSL_LIB_PATH=$GSL_LIB_PATH \
> -D CGAL_INCLUDE_DIR=$CGAL_INCLUDE_PATH \
> -D CGAL_LIB_PATH=$CGAL_LIB_PATH \
> -D GDAL_INCLUDE_DIR=$GDAL_INCLUDE_PATH \
> -D GDAL_LIB_DIR=$GDAL_LIB_PATH \
> -D XERCESC_INCLUDE_DIR=$XERCES_C_INCLUDE_PATH \
> -D XERCESC_LIB_PATH=$XERCES_C_LIB_PATH \
> -D GMP_INCLUDE_DIR=$GMP_INCLUDE_PATH \
> -D GMP_LIB_PATH=$GMP_LIB_PATH \
> -D MPFR_INCLUDE_DIR=$MPFR_INCLUDE_PATH \
> -D MPFR_LIB_PATH=$MPFR_LIB_PATH \
> -D CMAKE_VERBOSE_MAKEFILE=ON \
> .
>
> Also, before rerunning cmake I would recommend deleting the CMakeCache.txt
> file so if looks at everything again.
>
> I hope that helps, please let me know if I have help you any further.
>
> Best wishes,
>
> Pete
>
>
> ****************************************************
> * Dr Pete Bunting
> * Senior Lecturer in Remote Sensing
> * Institute of Geography and Earth Sciences
> * Aberystwyth University
> * Aberystwyth
> * Ceredigion
> * SY23 3DB
> * UK
> *
> * Ph: +44 (0) 1970 622615
> * Mob: +44 (0) 7917 842743
> * NZ Ph: +64 (0) 4 280 7430
> * Email: [email protected]
> ****************************************************
>
> On 10 Apr 2013, at 15:58, Peter Wolynec <[email protected]> wrote:
>
>>
>> Hi spdlib-develops,
>>
>> We are trying to install spdlib on a VM running Red Hat Enterprise Linux
>> Server release 6.3.
>>
>> We have the following two packages installed -
>>
>> xerces-c-devel-3.0.1-0.20.1.el6.x86_64
>> xerces-c-3.0.1-0.20.1.el6.x86_64
>>
>> but have installed, from source, xerces-c-3.1.1 elsewhere on the filesystem.
>>
>> The following command -
>>
>> cmake CMakeLists.txt -DCMAKE_INSTALL_PREFIX=/opt/spdlib/...
>>
>> returns with $? = 0
>>
>> but make returns the error below in the appendix.
>>
>> Can you please make any suggestions?
>>
>> What more information do you need from us?
>>
>> The include and library paths for HDF5, GSL, LibLAS, CGAL, Xerces-c, GMP and
>> MPFR
>> have been reset in CMakeLists.txt and .bash_profile
>>
>> A copy of spdlib has been obtained using -
>>
>> hg clone http://hg.code.sf.net/p/spdlib/code spdlib
>>
>> Thank you, in advance, for any information that you may be able to provide.
>>
>> Regards,
>> Peter.
>>
>> ---
>> [ 71%] Building CXX object
>> CMakeFiles/spdclearclass.dir/src/exe/spdclearclass/main.cpp.o
>> In file included from /usr/include/gdal/ogr_feature.h:34,
>> from /usr/include/gdal/ogrsf_frmts.h:33,
>> from
>> /opt/spdlib/src/spdlib_hg/include/spd/SPDProcessDataBlocks.h:33,
>> from
>> /opt/spdlib/src/spdlib_hg/include/spd/SPDProcessPulses.h:37,
>> from
>> /opt/spdlib/src/spdlib_hg/include/spd/SPDCopyRemovingClassificationProcessor.h:38,
>> from
>> /opt/spdlib/src/spdlib_hg/src/exe/spdclearclass/main.cpp:31:
>> /usr/include/gdal/ogr_featurestyle.h: In member function ‘const char*
>> OGRStylePen::Pattern(GBool&)’:
>> /usr/include/gdal/ogr_featurestyle.h:263: warning: cast from type ‘const
>> char*’ to type ‘char*’ casts away constness
>> In file included from
>> /opt/spdlib/src/spdlib_hg/include/spd/SPDProcessDataBlocks.h:34,
>> from
>> /opt/spdlib/src/spdlib_hg/include/spd/SPDProcessPulses.h:37,
>> from
>> /opt/spdlib/src/spdlib_hg/include/spd/SPDCopyRemovingClassificationProcessor.h:38,
>> from
>> /opt/spdlib/src/spdlib_hg/src/exe/spdclearclass/main.cpp:31:
>> /usr/include/gdal/ogr_api.h: At global scope:
>> /usr/include/gdal/ogr_api.h:393: warning: redundant redeclaration of ‘void
>> OGRRegisterAll()’ in same scope
>> /usr/include/gdal/ogrsf_frmts.h:305: warning: previous declaration of ‘void
>> OGRRegisterAll()’
>> Linking CXX executable spdclearclass
>> src/libspd.so.3.0.0: undefined reference to
>> `xercesc_3_1::XMLAttDefList::serialize(xercesc_3_1::XSerializeEngine&)'
>> src/libspd.so.3.0.0: undefined reference to
>> `xercesc_3_1::DTDEntityDecl::isSerializable() const'
>> src/libspd.so.3.0.0: undefined reference to
>> `xercesc_3_1::SAXParseException::~SAXParseException()'
>> src/libspd.so.3.0.0: undefined reference to
>> `xercesc_3_1::DOMImplementationRegistry::getDOMImplementation(unsigned short
>> const*)'
>> src/libspd.so.3.0.0: undefined reference to `typeinfo for
>> xercesc_3_1::SAXParseException'
>> src/libspd.so.3.0.0: undefined reference to `xercesc_3_1::XMemory::operator
>> delete(void*)'
>> src/libspd.so.3.0.0: undefined reference to
>> `xercesc_3_1::DTDEntityDecl::getProtoType() const'
>> src/libspd.so.3.0.0: undefined reference to
>> `xercesc_3_1::XMLUni::fgDOMErrorHandler'
>> src/libspd.so.3.0.0: undefined reference to
>> `xercesc_3_1::XMLString::release(char**, xercesc_3_1::MemoryManager*)'
>> src/libspd.so.3.0.0: undefined reference to
>> `xercesc_3_1::XMLAttDefList::isSerializable() const'
>> src/libspd.so.3.0.0: undefined reference to `typeinfo for
>> xercesc_3_1::XMLException'
>> src/libspd.so.3.0.0: undefined reference to
>> `xercesc_3_1::XMLPlatformUtils::Initialize(char const*, char const*,
>> xercesc_3_1::PanicHandler*, xercesc_3_1::MemoryManager*)'
>> src/libspd.so.3.0.0: undefined reference to
>> `xercesc_3_1::XMLPlatformUtils::fgMemoryManager'
>> src/libspd.so.3.0.0: undefined reference to `typeinfo for
>> xercesc_3_1::XMLEntityDecl'
>> src/libspd.so.3.0.0: undefined reference to
>> `xercesc_3_1::DTDEntityDecl::serialize(xercesc_3_1::XSerializeEngine&)'
>> src/libspd.so.3.0.0: undefined reference to
>> `xercesc_3_1::XMLString::release(unsigned short**,
>> xercesc_3_1::MemoryManager*)'
>> src/libspd.so.3.0.0: undefined reference to
>> `xercesc_3_1::XMLString::transcode(char const*, xercesc_3_1::MemoryManager*)'
>> src/libspd.so.3.0.0: undefined reference to `typeinfo for
>> xercesc_3_1::DOMException'
>> src/libspd.so.3.0.0: undefined reference to
>> `xercesc_3_1::XMLPlatformUtils::Terminate()'
>> src/libspd.so.3.0.0: undefined reference to
>> `xercesc_3_1::XMLEntityDecl::~XMLEntityDecl()'
>> src/libspd.so.3.0.0: undefined reference to
>> `xercesc_3_1::SAXParseException::SAXParseException(xercesc_3_1::SAXParseException
>> const&)'
>> src/libspd.so.3.0.0: undefined reference to
>> `xercesc_3_1::XMLAttDefList::getProtoType() const'
>> src/libspd.so.3.0.0: undefined reference to
>> `xercesc_3_1::XMLString::transcode(unsigned short const*,
>> xercesc_3_1::MemoryManager*)'
>> src/libspd.so.3.0.0: undefined reference to
>> `xercesc_3_1::XMLUni::fgXercescDefaultLocale'
>> src/libspd.so.3.0.0: undefined reference to
>> `xercesc_3_1::XMLString::transcode(char const*, unsigned short*, unsigned
>> long, xercesc_3_1::MemoryManager*)'
>> collect2: ld returned 1 exit status
>> make[2]: *** [spdclearclass] Error 1
>> make[1]: *** [CMakeFiles/spdclearclass.dir/all] Error 2
>> make: *** [all] Error 2
>> ---
>> ------------------------------------------------------------------------------
>> Precog is a next-generation analytics platform capable of advanced
>> analytics on semi-structured data. The platform includes APIs for building
>> apps and a phenomenal toolset for data science. Developers can use
>> our toolset for easy data analysis & visualization. Get a free account!
>> http://www2.precog.com/precogplatform/slashdotnewsletter_______________________________________________
>> spdlib-develop mailing list
>> [email protected]
>> https://lists.sourceforge.net/lists/listinfo/spdlib-develop
>
>
------------------------------------------------------------------------------
Precog is a next-generation analytics platform capable of advanced
analytics on semi-structured data. The platform includes APIs for building
apps and a phenomenal toolset for data science. Developers can use
our toolset for easy data analysis & visualization. Get a free account!
http://www2.precog.com/precogplatform/slashdotnewsletter
_______________________________________________
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