I had the same problem.  In my case, I was using an rst generated from 
latex source using pandoc.
I posted this comment to the pandoc list:

https://groups.google.com/forum/#!topic/pandoc-discuss/fzKnZHTlS8Q

Posting here as well, in case it is useful to someone else.
I am using the following workaround.

outfile.rst : infile.tex
pandoc -f latex -t rst -s $< | \
perl -p -e "s/^\[(lab-[^\]]*)\]$$/.. _\1:/g;" -e 
"s/\[(lab-[^\]]*)\]/:ref:\`\1\`/g;" -e "s/ / /g;" | \
grep -v '^   image$$' | grep -v '^\.\. role:: math(raw)$$' | grep -v '^   
:format: html latex$$' | \
cat > $@

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