Hi Carlos,
sorry for being to "very precise".
Of course the easiest way is to switch manually to Spyder and run the
script. But what I am aiming for is an automated workflow. So I will try to
explain this in more detail.
Our Microscope Control Software (ZEN Blue) is written in C# and used
IronPython as the internal scripting language. That is the place where the
user can automate their experiments. And this is where I wnat to start a
"normal" python script within Spyder. Usually I start python scripts like
this from inside the ZEN Blue software:
-------------------------IRON PYTHON SCRIPT IN ZEN BLUE (just parts)
------------------------
import clr
from System.Diagnostics import Process
...
# this is the location of the script use to plot the data
# use this version for a general approach -->; pass filename, X-column and
Y-column to plot directly from the macro
script1 = r'C:\My Scripts\PlotData_Example.py' # this is a "normal" python
script
# those are the parameters - filename, (X-Column and Y-Column)
# this one for the general approach
params1 = ' -f ' + csvfile + ' -x 2 -y 0 -r 2'
# start the data display script as an external application
app1 = Process();
app1.StartInfo.FileName = script1
app1.StartInfo.Arguments = params1
app1.Start()
----------------------------------------------------------------------------------
Since python script *.py are associated with python.exe the script will be
started easily this way. But when I do this the data (numpy array, ...) are
lost unless the script explicitly saves the data somewhere. but what I
would like to do is starting the same script from our Software within
Spyder. This way I would not have to save the data and reload again,
because they would be available within Spyder for further processing.
For me (as a non-expert) the question is how to start my python Script
within the active Sypder python or Ipython console. But I do not know yet,
how to do it or even if this is possible at all.
I hope this explains the workflow a bit better.
Cheers, Sebi
Am Samstag, 25. Oktober 2014 19:49:44 UTC+2 schrieb Carlos Córdoba:
>
> Hi,
>
> I'm not sure if I exactly follow you. How does this external app start
> your script? Do you really need it to do it? I mean, the easiest way would
> be to switch your external app for Spyder itself but it's a bit hard to
> give you further advice without knowing more details :-)
>
> Cheers,
> Carlos
>
> El 25/10/14 a las 04:43, sebastian06 escribió:
>
> Hi,
>
> I have a python script that uses the python wrapper for the BioFormats
> library. It works fine for imorting my image data sets, which show up in
> Spyder as a numpy array.
>
> Now I want uo start this script from an external application within
> Spyder, because I want to process the array afterwards. Just starting a
> script is easy, but I do not know how to start it within Spyder from an
> external app. What would be the easiest way to do this?
>
> Cheers, Sebi
>
>
>
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