For the next person:
I was able to get around this by doing the following:
* do not eagerload any of the relations, probably best to keep them out of
the identity map altogether
* use the sql expressions api to handle any migrations/work
dbSession.execute(
model.core.Foo.__table__\
.update()\
dbSession.execute(
model.core.Foo.__table__\
.delete()\
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