We all inherit less-than-ideal situations.

If this is running once a day and isn't impacting performance or other 
work, I wouldn't really worry about the huge join matrix.  It sounds like 
the current solution is "good enough".  In a few weeks or months you'll be 
better acquainted with SqlAlchemy and Sql in general and can revisit.

In terms of your 15minute script: When you can use subqueries, filters and 
`load_only` for certain columns, your backend will generate a smaller 
matrix and there will be a less data transferred "over the wire".  

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