I have tried to trace the problem further through the Sqlite source by 
checking at which point I could no-longer successfully call the system 
function. I got as far as xOpen through sqlite3_open > opendatabase > 
sqlite3Btreefactory > sqlite3Btreeopen > sqlite3PagerOpen > Sqlite3OsOpen > 
xOpen. Immediately prior to the xOpen call I could successfully make System 
calls but not after.

I'm not sure if this additional information may be of help.

Thanks
Chris 

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