Hey Nikhil! Thanks a lot for taking the time to answer this. I did not know about these verifiers and validators at all, so I learnt a little bit more about GIS weirdness. : )
I ran the geojson through the verifier, and tried running my script with the updated geojson. Unfortunately, it seems to be something else - I am not sure if tile boundaries or other complications with the mbtiles files is causing this issue, since these polygons aren't able to be cut up from any mbtiles file that I ran them on. The question is now present on the GIS StackExchange at https://gis.stackexchange.com/questions/301975/mbtiles-extracts-does-not-work-with-my-geojson . Thanks again, Nikhil! : ) Warmly, Aruna
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