OK, it opens workflows, but not all. The one in attachments does not.
This might be a wsdl-related problem as there are no wsdl processors
listed in the service panel.
My java version is
java version "1.6.0_07"
Java(TM) SE Runtime Environment (build 1.6.0_07-b06)
Java HotSpot(TM) Client VM (build 10.0-b23, mixed mode, sharing)
Jerzy
Alan Williams wrote:
Jerzy Orlowski wrote:
I open a workflow and nothing happens.
Here is the command-line output
I've downloaded it and it opens workflows (for me). The "indent-number"
exception is worrying as it suggests that there may be a problem with
your version of Java. Have you changed it?
I am though getting messages about:
Exception loading raven classloader for Activity instance
net.sf.taverna.raven.repository.ArtifactNotFoundException
at
net.sf.taverna.raven.repository.impl.LocalRepository.getLoader(LocalRepository.java:398)
at
net.sf.taverna.t2.workflowmodel.serialization.xml.AbstractXMLDeserializer.getRavenLoader(AbstractXMLDeserializer.java:164)
at
net.sf.taverna.t2.workflowmodel.serialization.xml.DispatchLayerXMLDeserializer.deserializeDispatchLayer(DispatchLayerXMLDeserializer.java:46)
at
net.sf.taverna.t2.workflowmodel.serialization.xml.DispatchStackXMLDeserializer.deserializeDispatchStack(DispatchStackXMLDeserializer.java:47)
and
Exception in thread "pool-4-thread-6" java.lang.NullPointerException
at
net.sf.taverna.t2.provenance.connector.DerbyProvenanceConnector$1.run(DerbyProvenanceConnector.java:292)
at
java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:650)
These are in Jira as "blocker" issues.
Jerzy orlowski
Alan
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<workflow xmlns="http://taverna.sf.net/2008/xml/t2flow"; version="1"><dataflow
id="d2ab4c10-9ec8-4280-8b75-b9c2e23e5950"
role="top"><name>dataflow0</name><inputPorts><port><name>query</name><depth>0</depth><granularDepth>0</granularDepth></port><port><name>program</name><depth>0</depth><granularDepth>0</granularDepth></port><port><name>database</name><depth>0</depth><granularDepth>0</granularDepth></port></inputPorts><outputPorts><port><name>result</name></port></outputPorts><processors><processor><name>searchSimple</name><inputPorts><port><name>database</name><depth>0</depth></port><port><name>program</name><depth>0</depth></port><port><name>query</name><depth>0</depth></port></inputPorts><outputPorts><port><name>Result</name><depth>0</depth><granularDepth>0</granularDepth></port></outputPorts><annotations
/><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>wsdl-activity</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.activities.wsdl.WSDLActivity</class><inputMap><map
from="query" to="query" /><map from="program" to="program" /><map
from="database" to="database" /></inputMap><outputMap><map from="Result"
to="Result" /></outputMap><configBean
encoding="xstream"><net.sf.taverna.t2.activities.wsdl.WSDLActivityConfigurationBean
xmlns="">
<wsdl>http://xml.nig.ac.jp/wsdl/Blast.wsdl</wsdl>
<operation>searchSimple</operation>
</net.sf.taverna.t2.activities.wsdl.WSDLActivityConfigurationBean></configBean><annotations
/></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean
encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig
xmlns="">
<maxJobs>1</maxJobs>
</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean
encoding="xstream"><null xmlns=""
/></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean
encoding="xstream"><null xmlns=""
/></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean
encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig
xmlns="">
<backoffFactor>1.0</backoffFactor>
<initialDelay>1000</initialDelay>
<maxDelay>5000</maxDelay>
<maxRetries>0</maxRetries>
</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean
encoding="xstream"><null xmlns=""
/></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy><cross><port
name="database" depth="0" /><port name="program" depth="0" /><port
name="query" depth="0"
/></cross></strategy></iteration></iterationStrategyStack></processor></processors><conditions
/><datalinks><datalink><sink
type="processor"><processor>searchSimple</processor><port>database</port></sink><source
type="dataflow"><port>database</port></source></datalink><datalink><sink
type="processor"><processor>searchSimple</processor><port>program</port></sink><source
type="dataflow"><port>program</port></source></datalink><datalink><sink
type="processor"><processor>searchSimple</processor><port>query</port></sink><source
type="dataflow"><port>query</port></source></datalink><datalink><sink
type="dataflow"><port>result</port></sink><source
type="processor"><processor>searchSimple</processor><port>Result</port></source></datalink></datalinks><annotations
/></dataflow></workflow>
------------------------------------------------------------------------------
Crystal Reports - New Free Runtime and 30 Day Trial
Check out the new simplified licensing option that enables
unlimited royalty-free distribution of the report engine
for externally facing server and web deployment.
http://p.sf.net/sfu/businessobjects
_______________________________________________
taverna-hackers mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/taverna-hackers
Developers Guide: http://www.mygrid.org.uk/usermanual1.7/dev_guide.html
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