If you get this out of memory error from the 2.1 beta 1:
01-Jun-2009 08:44:25 sun.awt.X11.XToolkit processException
WARNING: Exception on Toolkit thread
java.lang.OutOfMemoryError: PermGen space
at sun.awt.X11.XWM.getInsets(XWM.java:1460)
at
sun.awt.X11.XDecoratedPeer.handleConfigureNotifyEvent(XDecoratedPeer.java:722)
at sun.awt.X11.XBaseWindow.dispatchEvent(XBaseWindow.java:1122)
at sun.awt.X11.XBaseWindow.dispatchToWindow(XBaseWindow.java:1079)
at sun.awt.X11.XToolkit.dispatchEvent(XToolkit.java:475)
at sun.awt.X11.XToolkit.run(XToolkit.java:588)
at sun.awt.X11.XToolkit.run(XToolkit.java:523)
at java.lang.Thread.run(Thread.java:619)
then you might need to modify run.bat / run.sh so that it includes
-XX:MaxPermSize=140m
This error could occur if you are using many different types of
services (wsdl, soaplab, biomoby) in a Taverna 1 workflow.
For instance:
: st...@rpc268 ~/Desktop/taverna-2.1-beta-1;cat run.sh
#!/bin/sh
## resolve links - $0 may be a symlink
PRG="$0"
progname=`basename "$0"`
saveddir=`pwd`
# need this for relative symlinks
cd "$(dirname "$PRG")"
while [ -h "$PRG" ] ; do
ls=$(ls -ld "$PRG")
link=`expr "$ls" : '.*-> \(.*\)$'`
if expr "$link" : '.*/.*' > /dev/null; then
PRG="$link"
else
PRG=`dirname "$PRG"`"/$link"
fi
done
TAVERNA_HOME="`dirname "$PRG"`"
cd $TAVERNA_HOME
exec java -Xmx300m -Draven.profile=file:conf/current-profile.xml \
-XX:MaxPermSize=140m \
-Dtaverna.startup=. \
-Djava.system.class.loader=net.sf.taverna.raven.prelauncher.BootstrapClassLoader
\
-Dapple.laf.useScreenMenuBar=false \
-Dsun.swing.enableImprovedDragGesture \
-jar lib/prelauncher-*.jar
It does not help to increase the -Xmx300m - as the 'perm gen space'
seems to be a special memory area for keeping loaded classes.
(I've posted this to Jira: http://www.mygrid.org.uk/dev/issues/browse/T2-598 )
--
Stian Soiland-Reyes, myGrid team
School of Computer Science
The University of Manchester
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