Hi, There is another workflow that you might be interested in http://www.myexperiment.org/workflows/746
It is about microarray classification to predict tumor types. You need Taverna t 2.1 beta (or above) to run it. Best regards, -Wei Paolo Missier wrote: > Hi Sarah, > > regarding the first thread: > >> It doesn't seem possible to execute any of the workflows we have found >> (including the 2 workflows you have suggested) even on Taverna 1 >> and using Taverna 2 we cannot open the workflow "EBI interproscan". We >> are not sure about the reason... it can be the case that the web >> services associated are down... >> > I suspect you may be using an old beta release? > I recommend that you download the latest nightly build, just to make > sure. No installation required, all you do is fetch it from > http://www.mygrid.org.uk/taverna/nightly/taverna-2.1-beta-2-rc1.zip > unzip, and run taverna.sh > > Using this version, I was also able to load the multipleBlastP example, > i.e.: > Blastp: http://www.myexperiment.org/workflows/90 > > Regarding The Interpro scan workflow, it won't work correctly in T2, > because it uses a deprecated "loop construct" to implement a busy > waiting on an async service that is actually not supported by the new T2 > semantics. Instead, Stian and others have created a T2 version of it: > http://www.myexperiment.org/workflows/812?version=1 > this loads and executes fine in the beta version mentioned above, and > it's also a nice example of a new "loop operator" feature in action (see > CheckStatus) > > > Regarding relevant lists: I am copying this email to the > taverna-hackers (!) list: > > taverna-hackers mailing list > [email protected] > Web site: http://www.taverna.org.uk > Mailing lists: http://www.taverna.org.uk/taverna-mailing-lists/ > Developers Guide: http://www.mygrid.org.uk/tools/developer-information > > I am encouraging you or Heloise to join either this and/or the Taverna > Users list, reachable from here: > http://www.taverna.org.uk/taverna-mailing-lists/ > > It's a good, competent community (hi, guys! :-)) that includes > research-oriented people as well, and we try our best to make everything > in Taverna very open. > > Please do let me know how this goes... > > best, -Paolo > > > > ------------------------------------------------------------------------------ > _______________________________________________ > taverna-hackers mailing list > [email protected] > Web site: http://www.taverna.org.uk > Mailing lists: http://www.taverna.org.uk/taverna-mailing-lists/ > Developers Guide: http://www.mygrid.org.uk/tools/developer-information > -- Wei Tan, Ph.D. Computation Institute the University of Chicago|Argonne National Laboratory http://www.mcs.anl.gov/~wtan ------------------------------------------------------------------------------ _______________________________________________ taverna-hackers mailing list [email protected] Web site: http://www.taverna.org.uk Mailing lists: http://www.taverna.org.uk/taverna-mailing-lists/ Developers Guide: http://www.mygrid.org.uk/tools/developer-information
