Hi,
Thanks for your helps, I could have solved most of the issues.
May I ask your help again for the rest of the issues below?
> I have tried a simple test code imitating the BiomartActivity code as
>> below but it loops forever, and every recieveResult call seems like
>> generating these errors:
>>
>> ERROR 2009-10-06 12:40:51,387
>> (net.sf.taverna.t2.workflowmodel.processor.dispatch.AbstractErrorHandlerLayer:166)
>> - Could not forget [...@48d334]
>>
> >
>
>> ERROR 2009-10-06 12:40:51,396
>> (net.sf.taverna.t2.workflowmodel.processor.dispatch.AbstractErrorHandlerLayer:166)
>> - Could not forget [...@48d334]
>>
>
> I am not sure.
>
Generally speaking, what does "could not forget" in the error message mean?
Since this error is generated by Taverna, I would like to have any clue to
solve it -- at least to know whether it is something critical or not.
No stack trace, or any other information was dumped.
> 2. A plugin very similar to the BeanshellActivity,
>> but need to know the end-of-the-iteration of inputs (or workflow).
>> How can I notice such a condition -- which methods to use?
>>
>
> I am not sure what you mean. Perhaps you want to stream inputs?
Yes, assuming that my activity recieves a streamed input iteratively,
how can I notice the end of the iteration, from inside my activity code?
>
>
> 3. After developing these plugins, I would like to make my repository
>> public.
>> When I added my repository location manually to the Taverna's plugins.xml
>> it worked fine,
>> but it does not appear in the Taverna GUI's "Find New Plugins" menu.
>>
>
> Did you add the plugin site under the Find new plugins?
Yes, my site is already shown in the list.
>
>
> What sort of file should I add to my repository for Taverna to detect my
>> plugin, including update detections?
>>
>
> You need do not need to add anything to your repository. You need a place
> on a website that contains your plugins.xml and the description for each
> plugin. When a user adds that new plugin site into Taverna, then users can
> see your plugin.
>
I am sorry I am not really familar with maven related settings.
Where should I put the plugins.xml file in my repository (assuming that it
is the same format of the one which Taverna's local folder contains) -- the
root directory of the repository?
Under http://www.mygrid.org.uk/maven/,
http://www.mygrid.org.uk/maven/repository/, etc. I could not find any such
file.
And how about the update detection, is it simply based on the version number
in the plugins.xml file?
>
> By default, Taverna knows about the plugin site at mygrid.org.uk. There
> have been suggestions about having registries of plugin sites, or linking to
> them from a myExperiment pack. If you want your plugin to be visible
> without users doing anything special, then it is easiest to ask someone
> (e.g. me) to add your plugin to the mygrid plugin list.
I would like to ask this after testing everything.
A bug report, probably you already know;
after running any workflow, "Workflow running" is still shown with a
rounding icon on the left.
Thank you for your kind helps again.
Best regards,
-Yoshinobu
>
> Thank you very much in advance,
>>
>> -Yoshinobu
>>
>
> Alan
>
--
Yoshinobu Kano (Given/Family)
[email protected]
Project Research Associate, the University of Tokyo / U-Compare Project Lead
http://www-tsujii.is.s.u-tokyo.ac.jp/ http://u-compare.org/kano/
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