On Tue, Nov 9, 2010 at 00:19, Guzman Llambias - INCO <[email protected]> wrote: > I want to use this service with taverna but I can't as I cannot see > correctly the input parameters. I suppose it's because it imports > another XMLSchema. > > Is there a restriction on Taverna when using services with 2 or more > recursive import XML Schemas? > > http://www.bccs.uni.no/services/blastws/BlastPublic_2_2_21_ws0.wsdl
As far as I can tell, this service should work in Taverna. As for further documentation on what the different parameters mean I was not able to find it using a quick Google code, and it's not currently registered at biocatalogue.org The service takes inputs and returns outputs of so-called 'complex types' which Taverna has support for. These are nested data structures which you'll need to add some helper services to your workflow in order to construct or parse. After adding say 'RunBlastp' to your workflow in Taverna 2.2 - right click and select 'Add XML Input splitter'. Alternatively click 'Add XML input splitter' from the 'Details' tab in the Workflow Explorer. You might have to repeat this for some of the input ports of "complex types" on the input splitter, like 'QuerySequence'. You can repeat this for the outputs with 'Add XML output splitter'. See http://www.mygrid.org.uk/dev/wiki/display/taverna/WSDL#WSDL-XMLSplitters Note that for 'GetStatus' you'll probably want to use Taverna's looping to repeat calls until the result *matches* the expected result code. See http://www.mygrid.org.uk/dev/wiki/display/taverna/Loops (Use 'matches' to be able to search for a sub-string in the returned XML) -- Stian Soiland-Reyes, myGrid team School of Computer Science The University of Manchester ------------------------------------------------------------------------------ The Next 800 Companies to Lead America's Growth: New Video Whitepaper David G. Thomson, author of the best-selling book "Blueprint to a Billion" shares his insights and actions to help propel your business during the next growth cycle. Listen Now! http://p.sf.net/sfu/SAP-dev2dev _______________________________________________ taverna-hackers mailing list [email protected] Web site: http://www.taverna.org.uk Mailing lists: http://www.taverna.org.uk/about/contact-us/ Developers Guide: http://www.taverna.org.uk/developers/
