Thanks for your replies. Just realised I might have missed the point a bit: if you add an activity, add it to your workflow and save the workflow, although it's not in the "Available activities" can you still use it next time you load the workflow?
I'll get in touch with Guy Slater regarding Exonerate, thanks. Does it necessarily need to be wrapped in a WS or is there a way to run it locally? Thanks again, Xavier ps: if I can make a suggestion...I think a reset button near the search button would be useful. On 4 Mar 2009, at 12:11, Ian Dunlop wrote: > Hello, > > Saving activities is on the to do list (sorry) but is not scheduled > yet. It is definitely something that needs to be done (gets requested > quite often). Large scale genome analysis? Probably, I'll hand that > one over to our bio-informaticians. > > Cheers, > > Ian > > Ian Dunlop > myGrid team > School of Computer Science > University of Manchester > > > > On 4 Mar 2009, at 11:57, Xavier Watkins wrote: > >> Hello, >> I've just started using Taverna 2.0 and I'm having problems with >> "Activities". It's running it on OS X 1.5.6 leopard. >> >> I'm trying to set up a genome annotation pipeline with Genscan, >> RepeatMasker and Exonerate and although I manage to add the WSDL for >> these fine, if I then quit and relanch the software they're not in >> the >> list of available activities anymore... >> I was wondering where they are saved, I assume it's somewhere in >> Application\ Support/taverna-2.0/ ? >> >> The URLS I found for these services are below (Genscan & >> RepeatMasker): >> http://staff.vbi.vt.edu/pathport/services/wsdls/genscan.wsdl >> http://biomoby.org/services/genome.imim.es/runRepeatMasker >> >> I didn't manage to find any webservice running exonerate, could >> anybody recommend me one, and maybe alternatives to the ones above? >> >> Also I was wondering if Taverna has previously been used for large >> scale genome analysis? >> >> Many thanks, >> Xavier >> >> ------------------------------------------------------------------------------ >> Open Source Business Conference (OSBC), March 24-25, 2009, San >> Francisco, CA >> -OSBC tackles the biggest issue in open source: Open Sourcing the >> Enterprise >> -Strategies to boost innovation and cut costs with open source >> participation >> -Receive a $600 discount off the registration fee with the source >> code: SFAD >> http://p.sf.net/sfu/XcvMzF8H >> _______________________________________________ >> taverna-users mailing list >> [email protected] >> https://lists.sourceforge.net/lists/listinfo/taverna-users >> Documentation: http://www.mygrid.org.uk/usermanual1.7/ >> FAQ: http://www.mygrid.org.uk/wiki/Mygrid/TavernaFaq >> Biological Services: >> http://www.mygrid.org.uk/wiki/Mygrid/BiologicalWebServices > > > ------------------------------------------------------------------------------ > Open Source Business Conference (OSBC), March 24-25, 2009, San > Francisco, CA > -OSBC tackles the biggest issue in open source: Open Sourcing the > Enterprise > -Strategies to boost innovation and cut costs with open source > participation > -Receive a $600 discount off the registration fee with the source > code: SFAD > http://p.sf.net/sfu/XcvMzF8H > _______________________________________________ > taverna-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/taverna-users > Documentation: http://www.mygrid.org.uk/usermanual1.7/ > FAQ: http://www.mygrid.org.uk/wiki/Mygrid/TavernaFaq > Biological Services: > http://www.mygrid.org.uk/wiki/Mygrid/BiologicalWebServices > ------------------------------------------------------------------------------ Open Source Business Conference (OSBC), March 24-25, 2009, San Francisco, CA -OSBC tackles the biggest issue in open source: Open Sourcing the Enterprise -Strategies to boost innovation and cut costs with open source participation -Receive a $600 discount off the registration fee with the source code: SFAD http://p.sf.net/sfu/XcvMzF8H _______________________________________________ taverna-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/taverna-users Documentation: http://www.mygrid.org.uk/usermanual1.7/ FAQ: http://www.mygrid.org.uk/wiki/Mygrid/TavernaFaq Biological Services: http://www.mygrid.org.uk/wiki/Mygrid/BiologicalWebServices
