Hello
I get a similar output even with the beanshell processors. Workflow
attached.
The inputs are list with depth one.
Regards
Ketan
Paul Fisher wrote:
Hi,
Just from looking at your diagram, it seems that you have multiple
outputs going into the same inputs of each processor.
E.g. Image_crop has 2 outputs that look as if they are going into the
same input.
This may be causing your problem, especially if you have some iteration
strategy on each processor/service.
I could be wrong though. After all, I'm only looking at your workflow
with no ports showing.
Paul.
Ketan wrote:
Hello
I am trying to run a workflow that accepts a list of depth 1 as input.
The workflow runs into some java exception for a missing library.
But on the interface I get a weird output in the form of a list of too
much depth.
Screenshot attached.
Regards
Ketan.
------------------------------------------------------------------------
------------------------------------------------------------------------
------------------------------------------------------------------------------
Apps built with the Adobe(R) Flex(R) framework and Flex Builder(TM) are
powering Web 2.0 with engaging, cross-platform capabilities. Quickly and
easily build your RIAs with Flex Builder, the Eclipse(TM)based development
software that enables intelligent coding and step-through debugging.
Download the free 60 day trial. http://p.sf.net/sfu/www-adobe-com
------------------------------------------------------------------------
_______________________________________________
taverna-users mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/taverna-users
Documentation: http://www.mygrid.org.uk/usermanual1.7/
FAQ: http://www.mygrid.org.uk/wiki/Mygrid/TavernaFaq
Biological Services: http://www.mygrid.org.uk/wiki/Mygrid/BiologicalWebServices
------------------------------------------------------------------------------
Apps built with the Adobe(R) Flex(R) framework and Flex Builder(TM) are
powering Web 2.0 with engaging, cross-platform capabilities. Quickly and
easily build your RIAs with Flex Builder, the Eclipse(TM)based development
software that enables intelligent coding and step-through debugging.
Download the free 60 day trial. http://p.sf.net/sfu/www-adobe-com
_______________________________________________
taverna-users mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/taverna-users
Documentation: http://www.mygrid.org.uk/usermanual1.7/
FAQ: http://www.mygrid.org.uk/wiki/Mygrid/TavernaFaq
Biological Services: http://www.mygrid.org.uk/wiki/Mygrid/BiologicalWebServices
<workflow xmlns="http://taverna.sf.net/2008/xml/t2flow"; version="1"><dataflow
id="5aa4c36c-0f26-4fa4-b58f-fcb55ec0d0a9"
role="top"><name>dataflow0</name><inputPorts><port><name>Patient_Data</name><depth>1</depth><granularDepth>1</granularDepth></port><port><name>Config</name><depth>1</depth><granularDepth>1</granularDepth></port></inputPorts><outputPorts><port><name>Results</name></port></outputPorts><processors><processor><name>Image_Crop</name><inputPorts><port><name>DataIn</name><depth>0</depth></port><port><name>ConfigIn</name><depth>0</depth></port></inputPorts><outputPorts><port><name>DataOut</name><depth>0</depth><granularDepth>0</granularDepth></port><port><name>ConfigOut</name><depth>0</depth><granularDepth>0</granularDepth></port></outputPorts><annotations
/><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>beanshell-activity</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.activities.beanshell.BeanshellActivity</class><inputMap><map
from="ConfigIn" to="ConfigIn" /><map from="DataIn" to="DataIn"
/></inputMap><outputMap><map from="DataOut" to="DataOut" /><map
from="ConfigOut" to="ConfigOut" /></outputMap><configBean
encoding="xstream"><net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean
xmlns="">
<script>print(DataIn);
print(configIn);</script>
<dependencies />
<classLoaderSharing>workflow</classLoaderSharing>
<localDependencies />
<artifactDependencies />
<inputs>
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
<handledReferenceSchemes />
<translatedElementType>java.lang.String</translatedElementType>
<allowsLiteralValues>true</allowsLiteralValues>
<name>DataIn</name>
<depth>0</depth>
<mimeTypes>
<string>text/plain</string>
</mimeTypes>
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
<handledReferenceSchemes />
<translatedElementType>java.lang.String</translatedElementType>
<allowsLiteralValues>true</allowsLiteralValues>
<name>ConfigIn</name>
<depth>0</depth>
<mimeTypes>
<string>text/plain</string>
</mimeTypes>
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
</inputs>
<outputs>
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
<granularDepth>0</granularDepth>
<name>DataOut</name>
<depth>0</depth>
<mimeTypes>
<string>text/plain</string>
</mimeTypes>
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
<granularDepth>0</granularDepth>
<name>ConfigOut</name>
<depth>0</depth>
<mimeTypes>
<string>text/plain</string>
</mimeTypes>
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
</outputs>
</net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean></configBean><annotations
/></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean
encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig
xmlns="">
<maxJobs>1</maxJobs>
</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean
encoding="xstream"><null xmlns=""
/></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean
encoding="xstream"><null xmlns=""
/></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean
encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig
xmlns="">
<backoffFactor>1.0</backoffFactor>
<initialDelay>1000</initialDelay>
<maxDelay>5000</maxDelay>
<maxRetries>0</maxRetries>
</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean
encoding="xstream"><null xmlns=""
/></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy><cross><port
name="DataIn" depth="0" /><port name="ConfigIn" depth="0"
/></cross></strategy></iteration></iterationStrategyStack></processor><processor><name>Interpolation</name><inputPorts><port><name>DataIn</name><depth>0</depth></port><port><name>ConfigIn</name><depth>0</depth></port></inputPorts><outputPorts><port><name>DataOut</name><depth>0</depth><granularDepth>0</granularDepth></port><port><name>ConfigOut</name><depth>0</depth><granularDepth>0</granularDepth></port></outputPorts><annotations
/><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>beanshell-activity</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.activities.beanshell.BeanshellActivity</class><inputMap><map
from="ConfigIn" to="ConfigIn" /><map from="DataIn" to="DataIn"
/></inputMap><outputMap><map from="DataOut" to="DataOut" /><map
from="ConfigOut" to="ConfigOut" /></outputMap><configBean
encoding="xstream"><net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean
xmlns="">
<script />
<dependencies />
<classLoaderSharing>workflow</classLoaderSharing>
<localDependencies />
<artifactDependencies />
<inputs>
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
<handledReferenceSchemes />
<translatedElementType>java.lang.String</translatedElementType>
<allowsLiteralValues>true</allowsLiteralValues>
<name>DataIn</name>
<depth>0</depth>
<mimeTypes>
<string>text/plain</string>
</mimeTypes>
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
<handledReferenceSchemes />
<translatedElementType>java.lang.String</translatedElementType>
<allowsLiteralValues>true</allowsLiteralValues>
<name>ConfigIn</name>
<depth>0</depth>
<mimeTypes>
<string>text/plain</string>
</mimeTypes>
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
</inputs>
<outputs>
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
<granularDepth>0</granularDepth>
<name>DataOut</name>
<depth>0</depth>
<mimeTypes>
<string>text/plain</string>
</mimeTypes>
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
<granularDepth>0</granularDepth>
<name>ConfigOut</name>
<depth>0</depth>
<mimeTypes>
<string>text/plain</string>
</mimeTypes>
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
</outputs>
</net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean></configBean><annotations
/></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean
encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig
xmlns="">
<maxJobs>1</maxJobs>
</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean
encoding="xstream"><null xmlns=""
/></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean
encoding="xstream"><null xmlns=""
/></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean
encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig
xmlns="">
<backoffFactor>1.0</backoffFactor>
<initialDelay>1000</initialDelay>
<maxDelay>5000</maxDelay>
<maxRetries>0</maxRetries>
</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean
encoding="xstream"><null xmlns=""
/></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy><cross><port
name="DataIn" depth="0" /><port name="ConfigIn" depth="0"
/></cross></strategy></iteration></iterationStrategyStack></processor><processor><name>Image_Pyramid_Decomposition</name><inputPorts><port><name>DataIn</name><depth>0</depth></port><port><name>ConfigIn</name><depth>0</depth></port></inputPorts><outputPorts><port><name>ConfigOut</name><depth>0</depth><granularDepth>0</granularDepth></port><port><name>DataOut</name><depth>0</depth><granularDepth>0</granularDepth></port></outputPorts><annotations
/><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>beanshell-activity</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.activities.beanshell.BeanshellActivity</class><inputMap><map
from="ConfigIn" to="ConfigIn" /><map from="DataIn" to="DataIn"
/></inputMap><outputMap><map from="DataOut" to="DataOut" /><map
from="ConfigOut" to="ConfigOut" /></outputMap><configBean
encoding="xstream"><net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean
xmlns="">
<script />
<dependencies />
<classLoaderSharing>workflow</classLoaderSharing>
<localDependencies />
<artifactDependencies />
<inputs>
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
<handledReferenceSchemes />
<translatedElementType>java.lang.String</translatedElementType>
<allowsLiteralValues>true</allowsLiteralValues>
<name>DataIn</name>
<depth>0</depth>
<mimeTypes>
<string>text/plain</string>
</mimeTypes>
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
<handledReferenceSchemes />
<translatedElementType>java.lang.String</translatedElementType>
<allowsLiteralValues>true</allowsLiteralValues>
<name>ConfigIn</name>
<depth>0</depth>
<mimeTypes>
<string>text/plain</string>
</mimeTypes>
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
</inputs>
<outputs>
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
<granularDepth>0</granularDepth>
<name>DataOut</name>
<depth>0</depth>
<mimeTypes>
<string>text/plain</string>
</mimeTypes>
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
<granularDepth>0</granularDepth>
<name>ConfigOut</name>
<depth>0</depth>
<mimeTypes>
<string>text/plain</string>
</mimeTypes>
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
</outputs>
</net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean></configBean><annotations
/></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean
encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig
xmlns="">
<maxJobs>1</maxJobs>
</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean
encoding="xstream"><null xmlns=""
/></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean
encoding="xstream"><null xmlns=""
/></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean
encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig
xmlns="">
<backoffFactor>1.0</backoffFactor>
<initialDelay>1000</initialDelay>
<maxDelay>5000</maxDelay>
<maxRetries>0</maxRetries>
</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean
encoding="xstream"><null xmlns=""
/></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy><cross><port
name="DataIn" depth="0" /><port name="ConfigIn" depth="0"
/></cross></strategy></iteration></iterationStrategyStack></processor><processor><name>Gradient_Computing</name><inputPorts><port><name>ConfigIn</name><depth>0</depth></port><port><name>DataIn</name><depth>0</depth></port></inputPorts><outputPorts><port><name>DataOut</name><depth>0</depth><granularDepth>0</granularDepth></port><port><name>ConfigOut</name><depth>0</depth><granularDepth>0</granularDepth></port></outputPorts><annotations
/><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>beanshell-activity</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.activities.beanshell.BeanshellActivity</class><inputMap><map
from="ConfigIn" to="ConfigIn" /><map from="DataIn" to="DataIn"
/></inputMap><outputMap><map from="DataOut" to="DataOut" /><map
from="ConfigOut" to="ConfigOut" /></outputMap><configBean
encoding="xstream"><net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean
xmlns="">
<script />
<dependencies />
<classLoaderSharing>workflow</classLoaderSharing>
<localDependencies />
<artifactDependencies />
<inputs>
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
<handledReferenceSchemes />
<translatedElementType>java.lang.String</translatedElementType>
<allowsLiteralValues>true</allowsLiteralValues>
<name>ConfigIn</name>
<depth>0</depth>
<mimeTypes>
<string>text/plain</string>
</mimeTypes>
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
<handledReferenceSchemes />
<translatedElementType>java.lang.String</translatedElementType>
<allowsLiteralValues>true</allowsLiteralValues>
<name>DataIn</name>
<depth>0</depth>
<mimeTypes>
<string>text/plain</string>
</mimeTypes>
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
</inputs>
<outputs>
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
<granularDepth>0</granularDepth>
<name>ConfigOut</name>
<depth>0</depth>
<mimeTypes>
<string>text/plain</string>
</mimeTypes>
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
<granularDepth>0</granularDepth>
<name>DataOut</name>
<depth>0</depth>
<mimeTypes>
<string>text/plain</string>
</mimeTypes>
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
</outputs>
</net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean></configBean><annotations
/></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean
encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig
xmlns="">
<maxJobs>1</maxJobs>
</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean
encoding="xstream"><null xmlns=""
/></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean
encoding="xstream"><null xmlns=""
/></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean
encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig
xmlns="">
<backoffFactor>1.0</backoffFactor>
<initialDelay>1000</initialDelay>
<maxDelay>5000</maxDelay>
<maxRetries>0</maxRetries>
</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean
encoding="xstream"><null xmlns=""
/></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy><cross><port
name="ConfigIn" depth="0" /><port name="DataIn" depth="0"
/></cross></strategy></iteration></iterationStrategyStack></processor><processor><name>Border_Detection</name><inputPorts><port><name>ConfigIn</name><depth>0</depth></port><port><name>DataIn</name><depth>0</depth></port></inputPorts><outputPorts><port><name>ConfigOut</name><depth>0</depth><granularDepth>0</granularDepth></port><port><name>DataOut</name><depth>0</depth><granularDepth>0</granularDepth></port></outputPorts><annotations
/><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>beanshell-activity</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.activities.beanshell.BeanshellActivity</class><inputMap><map
from="ConfigIn" to="ConfigIn" /><map from="DataIn" to="DataIn"
/></inputMap><outputMap><map from="DataOut" to="DataOut" /><map
from="ConfigOut" to="ConfigOut" /></outputMap><configBean
encoding="xstream"><net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean
xmlns="">
<script />
<dependencies />
<classLoaderSharing>workflow</classLoaderSharing>
<localDependencies />
<artifactDependencies />
<inputs>
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
<handledReferenceSchemes />
<translatedElementType>java.lang.String</translatedElementType>
<allowsLiteralValues>true</allowsLiteralValues>
<name>DataIn</name>
<depth>0</depth>
<mimeTypes>
<string>text/plain</string>
</mimeTypes>
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
<handledReferenceSchemes />
<translatedElementType>java.lang.String</translatedElementType>
<allowsLiteralValues>true</allowsLiteralValues>
<name>ConfigIn</name>
<depth>0</depth>
<mimeTypes>
<string>text/plain</string>
</mimeTypes>
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
</inputs>
<outputs>
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
<granularDepth>0</granularDepth>
<name>DataOut</name>
<depth>0</depth>
<mimeTypes>
<string>text/plain</string>
</mimeTypes>
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
<granularDepth>0</granularDepth>
<name>ConfigOut</name>
<depth>0</depth>
<mimeTypes>
<string>text/plain</string>
</mimeTypes>
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
</outputs>
</net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean></configBean><annotations
/></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean
encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig
xmlns="">
<maxJobs>1</maxJobs>
</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean
encoding="xstream"><null xmlns=""
/></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean
encoding="xstream"><null xmlns=""
/></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean
encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig
xmlns="">
<backoffFactor>1.0</backoffFactor>
<initialDelay>1000</initialDelay>
<maxDelay>5000</maxDelay>
<maxRetries>0</maxRetries>
</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean
encoding="xstream"><null xmlns=""
/></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy><cross><port
name="ConfigIn" depth="0" /><port name="DataIn" depth="0"
/></cross></strategy></iteration></iterationStrategyStack></processor><processor><name>Motion_Estimation</name><inputPorts><port><name>DataFromGC</name><depth>0</depth></port><port><name>ConfigFromGC</name><depth>0</depth></port><port><name>ConfigFromBD</name><depth>0</depth></port><port><name>DataFromBD</name><depth>0</depth></port></inputPorts><outputPorts><port><name>DataOut</name><depth>0</depth><granularDepth>0</granularDepth></port></outputPorts><annotations
/><activities><activity><raven><group>net.sf.taverna.t2.activities</group><artifact>beanshell-activity</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.activities.beanshell.BeanshellActivity</class><inputMap><map
from="ConfigFromBD" to="ConfigFromBD" /><map from="DataFromGC" to="DataFromGC"
/><map from="ConfigFromGC" to="ConfigFromGC" /><map from="DataFromBD"
to="DataFromBD" /></inputMap><outputMap><map from="DataOut" to="DataOut"
/></outputMap><configBean
encoding="xstream"><net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean
xmlns="">
<script />
<dependencies />
<classLoaderSharing>workflow</classLoaderSharing>
<localDependencies />
<artifactDependencies />
<inputs>
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
<handledReferenceSchemes />
<translatedElementType>java.lang.String</translatedElementType>
<allowsLiteralValues>true</allowsLiteralValues>
<name>DataFromGC</name>
<depth>0</depth>
<mimeTypes>
<string>text/plain</string>
</mimeTypes>
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
<handledReferenceSchemes />
<translatedElementType>java.lang.String</translatedElementType>
<allowsLiteralValues>true</allowsLiteralValues>
<name>DataFromBD</name>
<depth>0</depth>
<mimeTypes>
<string>text/plain</string>
</mimeTypes>
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
<handledReferenceSchemes />
<translatedElementType>java.lang.String</translatedElementType>
<allowsLiteralValues>true</allowsLiteralValues>
<name>ConfigFromGC</name>
<depth>0</depth>
<mimeTypes>
<string>text/plain</string>
</mimeTypes>
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
<handledReferenceSchemes />
<translatedElementType>java.lang.String</translatedElementType>
<allowsLiteralValues>true</allowsLiteralValues>
<name>ConfigFromBD</name>
<depth>0</depth>
<mimeTypes>
<string>text/plain</string>
</mimeTypes>
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
</inputs>
<outputs>
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
<granularDepth>0</granularDepth>
<name>DataOut</name>
<depth>0</depth>
<mimeTypes>
<string>text/plain</string>
</mimeTypes>
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
</outputs>
</net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean></configBean><annotations
/></activity></activities><dispatchStack><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize</class><configBean
encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig
xmlns="">
<maxJobs>1</maxJobs>
</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ParallelizeConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce</class><configBean
encoding="xstream"><null xmlns=""
/></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failover</class><configBean
encoding="xstream"><null xmlns=""
/></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry</class><configBean
encoding="xstream"><net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig
xmlns="">
<backoffFactor>1.0</backoffFactor>
<initialDelay>1000</initialDelay>
<maxDelay>5000</maxDelay>
<maxRetries>0</maxRetries>
</net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.RetryConfig></configBean></dispatchLayer><dispatchLayer><raven><group>net.sf.taverna.t2</group><artifact>workflowmodel-impl</artifact><version>0.4</version></raven><class>net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke</class><configBean
encoding="xstream"><null xmlns=""
/></configBean></dispatchLayer></dispatchStack><iterationStrategyStack><iteration><strategy><cross><port
name="DataFromGC" depth="0" /><port name="ConfigFromGC" depth="0" /><port
name="ConfigFromBD" depth="0" /><port name="DataFromBD" depth="0"
/></cross></strategy></iteration></iterationStrategyStack></processor></processors><conditions
/><datalinks><datalink><sink
type="processor"><processor>Image_Crop</processor><port>DataIn</port></sink><source
type="dataflow"><port>Patient_Data</port></source></datalink><datalink><sink
type="processor"><processor>Image_Crop</processor><port>ConfigIn</port></sink><source
type="dataflow"><port>Config</port></source></datalink><datalink><sink
type="processor"><processor>Interpolation</processor><port>DataIn</port></sink><source
type="processor"><processor>Image_Crop</processor><port>DataOut</port></source></datalink><datalink><sink
type="processor"><processor>Interpolation</processor><port>ConfigIn</port></sink><source
type="processor"><processor>Image_Crop</processor><port>ConfigOut</port></source></datalink><datalink><sink
type="processor"><processor>Image_Pyramid_Decomposition</processor><port>DataIn</port></sink><source
type="processor"><processor>Interpolation</processor><port>DataOut</port></source></datalink><datalink><sink
type="processor"><processor>Image_Pyramid_Decomposition</processor><port>ConfigIn</port></sink><source
type="processor"><processor>Interpolation</processor><port>ConfigOut</port></source></datalink><datalink><sink
type="processor"><processor>Gradient_Computing</processor><port>ConfigIn</port></sink><source
type="processor"><processor>Image_Pyramid_Decomposition</processor><port>ConfigOut</port></source></datalink><datalink><sink
type="processor"><processor>Gradient_Computing</processor><port>DataIn</port></sink><source
type="processor"><processor>Image_Pyramid_Decomposition</processor><port>DataOut</port></source></datalink><datalink><sink
type="processor"><processor>Border_Detection</processor><port>ConfigIn</port></sink><source
type="processor"><processor>Image_Pyramid_Decomposition</processor><port>ConfigOut</port></source></datalink><datalink><sink
type="processor"><processor>Border_Detection</processor><port>DataIn</port></sink><source
type="processor"><processor>Image_Pyramid_Decomposition</processor><port>DataOut</port></source></datalink><datalink><sink
type="processor"><processor>Motion_Estimation</processor><port>DataFromGC</port></sink><source
type="processor"><processor>Gradient_Computing</processor><port>DataOut</port></source></datalink><datalink><sink
type="processor"><processor>Motion_Estimation</processor><port>ConfigFromGC</port></sink><source
type="processor"><processor>Gradient_Computing</processor><port>ConfigOut</port></source></datalink><datalink><sink
type="processor"><processor>Motion_Estimation</processor><port>ConfigFromBD</port></sink><source
type="processor"><processor>Border_Detection</processor><port>ConfigOut</port></source></datalink><datalink><sink
type="processor"><processor>Motion_Estimation</processor><port>DataFromBD</port></sink><source
type="processor"><processor>Border_Detection</processor><port>DataOut</port></source></datalink><datalink><sink
type="dataflow"><port>Results</port></sink><source
type="processor"><processor>Motion_Estimation</processor><port>DataOut</port></source></datalink></datalinks><annotations
/></dataflow></workflow>------------------------------------------------------------------------------
Apps built with the Adobe(R) Flex(R) framework and Flex Builder(TM) are
powering Web 2.0 with engaging, cross-platform capabilities. Quickly and
easily build your RIAs with Flex Builder, the Eclipse(TM)based development
software that enables intelligent coding and step-through debugging.
Download the free 60 day trial. http://p.sf.net/sfu/www-adobe-com
_______________________________________________
taverna-users mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/taverna-users
Documentation: http://www.mygrid.org.uk/usermanual1.7/
FAQ: http://www.mygrid.org.uk/wiki/Mygrid/TavernaFaq
Biological Services: http://www.mygrid.org.uk/wiki/Mygrid/BiologicalWebServices
