Hello, I have constructed a workflow to do the first part you requested. Getting the sequences should be fairly easy now. http://www.myexperiment.org/workflows/1037?version=1
If you want to change the species, you might want to add in a beanshell to append the organism specific and current filter to the species name. You may also want to add in an input port instead of a string constant, to get the user chosen species. Hope that helps. Paul. [email protected] wrote: > I am new to Taverna. I have easily found several web services > available that allow me to get a sequence from an accession number. > Most examples I have seen deal with an existing accession number > list. But first, I would like to query genbank with the name of a > taxa and get back a list of accession numbers for that taxa preferably > in XML so that I can run xpath queries on it. Then, the next step of > my workflow could get the sequences from this list of accession > numbers. Are there any services out there that will give me a list of > all accession numbers for a particular taxa or a particular gene or both? > ------------------------------------------------------------------------ > > ------------------------------------------------------------------------------ > The Planet: dedicated and managed hosting, cloud storage, colocation > Stay online with enterprise data centers and the best network in the business > Choose flexible plans and management services without long-term contracts > Personal 24x7 support from experience hosting pros just a phone call away. > http://p.sf.net/sfu/theplanet-com > ------------------------------------------------------------------------ > > _______________________________________________ > taverna-users mailing list > [email protected] > [email protected] > Web site: http://www.taverna.org.uk > Mailing lists: http://www.taverna.org.uk/taverna-mailing-lists/ > ------------------------------------------------------------------------------ The Planet: dedicated and managed hosting, cloud storage, colocation Stay online with enterprise data centers and the best network in the business Choose flexible plans and management services without long-term contracts Personal 24x7 support from experience hosting pros just a phone call away. http://p.sf.net/sfu/theplanet-com _______________________________________________ taverna-users mailing list [email protected] [email protected] Web site: http://www.taverna.org.uk Mailing lists: http://www.taverna.org.uk/taverna-mailing-lists/
