Hello Albert, On 19 Nov 2010, at 16:44, Albert Mascarell wrote:
> I've been trying to use T2server with an Rscript-based workflow. However > after running it correctly on the workbench, I tried in T2server. After many > failures I decided to run the simplest workflow ever (just input port to > output port workflow, see attachment) in order to test whether Rshell was not > well configured. > > Using T2 server via PHP (the PHP file is attached): > - Passing a simple value to the "in" port, such as "Hello World" it creates > an output binary file containing "Hello World" > - Passing a file containing "Hello World" did nothing: > > This are the inputs files and input ports: > > http://localhost:8080/taverna-server/rest/runs/d2ab0d5f-29e5-4407-849d-e13f97c2e2e5/wd/ > <ns3:directoryContents> > <ns2:file > xlink:href="http://localhost:8080/taverna-server/rest/runs/3de4641b-dc79-4135-9790-bb114464a50c/wd/hello.txt"; > ns2:name="hello.txt">hello.txt</ns2:file> > </ns3:directoryContents> > > > http://localhost:8080/taverna-server/rest/runs/cab35be2-4e3e-4157-8bde-832045cf6b1d/input/input/in > > <ns2:runInput ns2:name="in"> > <ns2:file> hello.txt </ns2:file> > </ns2:runInput> I think your problem is here. You are sending the filename in the XML with a space either side of it so Taverna is trying to find a file called " hello.txt ". I have just tested this myself and seen the same failure. Could you try changing that line to <ns2:file>hello.txt</ns2:file> and trying again? Best wishes, Rob > What do you think it is happening? Do I upload on a wrong way the input file? > Let me say that I tried many many options, but the only way I succeded was > uploading "hello world" directly as a value to the input. It was OK for this > example, but when trying to pass as a value higher strings (such as real > files), it crashed because of too much large string. > I've tried everything I can imagine...with no success... > > Thank you very much. > > Regards, > > Albert Mascarell Creus > www.o2hlink.com -- Robert Haines myGrid Team School of Computer Science University of Manchester ------------------------------------------------------------------------------ Beautiful is writing same markup. Internet Explorer 9 supports standards for HTML5, CSS3, SVG 1.1, ECMAScript5, and DOM L2 & L3. Spend less time writing and rewriting code and more time creating great experiences on the web. Be a part of the beta today http://p.sf.net/sfu/msIE9-sfdev2dev _______________________________________________ taverna-users mailing list [email protected] [email protected] Web site: http://www.taverna.org.uk Mailing lists: http://www.taverna.org.uk/about/contact-us/
