There are many online websites translate neuclotide to Protein e.g. but
they don't give a method (like NCBI entrez) to use them easily.
*http://www.ebi.ac.uk/Tools/st/* <http://www.ebi.ac.uk/Tools/st/> Transeq
and Sixpack algorithm
http://www.fr33.net/translator.php translate to amino acids, forward and
reverse frames
http://www.bioinformatics.org/sms2/translate.html this accepts FASTA to
convert to protein
*http://web.expasy.org/translate/* <http://web.expasy.org/translate/> I
don’t know which parameters need to be set.
*http://bio.lundberg.gu.se/edu/translat.html*
<http://bio.lundberg.gu.se/edu/translat.html> this has many other
parameters including frames.
*http://insilico.ehu.es/translate/ <http://insilico.ehu.es/translate/>*
I only need neucleotide translated to protein. BlastX probably searches by
translated neucleotide, but does not give the translation itself. It is not
written clear anywhere. I found that Transeq only translates to Protein,
couldn't make it work though.
On
www.rcsb.org/pdb/staticHelp.do?p=help/advancedsearch/translatedNucleotideSequence.html
they shown a translated query, but they are probably returning it after
searching in some database.
On Wed, Jul 16, 2014 at 7:04 PM, Alan R Williams <
[email protected]> wrote:
> On 14/07/2014 03:38, Muhammad Usama wrote:
> > Does anyone know any service to do that. All I find is online
> > applications where I paste put the code and get results. Didn't find a
> > service or component or workflow yet.
>
> Hello.
>
> Many online applications have REST APIs that you can use. Which
> applications were you looking at.
>
> Are the REST services described at
> http://www.rcsb.org/pdb/software/rest.do any use?
>
> > --
> > Muhammad Usama
> > 2011-NUST-MS-CS-009
>
> Alan
>
>
>
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--
Muhammad Usama
2011-NUST-MS-CS-009
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