Thank you for all your replies, looks like prelink is indeed the
culprit, even "rpm -V" told me so, I just did not know what "prelink"
meant so it went in one ear and out the other:

[r...@server2 ~]# rpm -V e2fsprogs
prelink: /sbin/mkfs.ext3: at least one of file's dependencies has
changed since prelinking
S.?....T    /sbin/mkfs.ext3
[r...@server2 ~]#

Now I have to study on prelinking so I can understand what went wrong.
  Both systems run prelinking, by the way; it's that way on CentOS 5
out of the box.

Thanks!
Aleksey
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