Hello,
I have largely gotten my WinPython/Theano/CUDA orchestra running, I think, 
but I ran into a problem when I tried to compile the theanets mnist example 
at http://theanets.readthedocs.io/en/stable/examples/mnist-classifier.html.


First, let me indicate what works correctly.
The check_blas.py test runs correctly and is linking against the gpu.
The specific test program 
on http://deeplearning.net/software/theano/install_windows.html to 
determine whether the GPU is being used runs without problems and indicates 
the GPU is running.

I have also been able to run the lasagne mnist program 
[https://github.com/Lasagne/Lasagne/blob/master/examples/mnist.py] on the 
GPU.

So I think the above means that lots of things are working properly...

...but when I tried to run the theanets mnist example 
at http://theanets.readthedocs.io/en/stable/examples/mnist-classifier.html 
or one of the other theanets examples I get errors being thrown by File 
"C:\Winpython\WinPython-64bit-3.4.4.2\python-3.4.4.amd64\lib\site-packages\theano-0.7.0-py3.4.egg\theano\sandbox\cuda\nvcc_compiler.py"

[Note, I've tried the bleeding edge version as well, same errors.]

At first I got the error that crtdefs.h was missing. I fixed this by 
modifying my INCLUDE statement on my nvcc.profile to include C:\Program 
Files (x86)\Microsoft Visual Studio 12.0\VC\include

Then I got an error saying that basetsd.h was missing, so I 
added C:\Program Files (x86)\Microsoft SDKs\Windows\v7.1A\Include to the 
include file as well.

Now all hell breaks loose when I try to run the program. First I get some 
warnings like:
C:\Winpython\WinPython-64bit-3.4.4.2\python-3.4.4.amd64\lib\site-packages\theano-0.7.0-py3.4.egg\theano\sandbox\cuda\cuda_ndarray.cuh(17)
 
: warning C4005: 'PyString_Check' : macro redefinition
        
C:\Winpython\WinPython-64bit-3.4.4.2\python-3.4.4.amd64\lib\site-packages\numpy\core\include\numpy/npy_3kcompat.h(63)
 
: see previous definition of 'PyString_Check'

Later I see this:
C:\Program Files\NVIDIA GPU Computing 
Toolkit\CUDA\v7.5\include\crtdefs.h(496): error: invalid redeclaration of 
type name "size_t"

And then there are a bunch of errors all related to size_t.

The base call in the traceback is

 File 
"C:\Winpython\WinPython-64bit-3.4.4.2\python-3.4.4.amd64\lib\site-packages\theano-0.7.0-py3.4.egg\theano\sandbox\cuda\nvcc_compiler.py",
 
line 423, in compile_str
    'for cmd', ' '.join(cmd))

This appears to have something to do with unsigned integers.

And I get this note:

Exception: ('The following error happened while compiling the node', 
Shape_i{1}(out.w), '\n', 'nvcc return status', 2, 'for cmd', 'nvcc -shared 
-O3 --use-local-env --cl-version=2013 -arch=sm_52 -Xlinker /DEBUG -D 
HAVE_ROUND -m64 -Xcompiler 
-DCUDA_NDARRAY_CUH=m11b90075e2397c684f9dc0f7276eab8f,-D 
NPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION,/Zi,/MD 
-IC:\\Users\\David\\AppData\\Local\\Theano\\compiledir_Windows-10-10.0.10586-Intel64_Family_6_Model_94_Stepping_3_GenuineIntel-3.4.4-64\\cuda_ndarray
 
-INone\\include 
-IC:\\Winpython\\WinPython-64bit-3.4.4.2\\python-3.4.4.amd64\\lib\\site-packages\\numpy\\core\\include
 
-IC:\\Winpython\\WinPython-64bit-3.4.4.2\\python-3.4.4.amd64\\include 
-IC:\\Winpython\\WinPython-64bit-3.4.4.2\\python-3.4.4.amd64\\lib\\site-packages\\theano-0.7.0-py3.4.egg\\theano\\sandbox\\cuda
 
-o 
C:\\Users\\David\\AppData\\Local\\Theano\\compiledir_Windows-10-10.0.10586-Intel64_Family_6_Model_94_Stepping_3_GenuineIntel-3.4.4-64\\tmp4rrj8mgl\\me2fb8274f75ca25753e818dfaeeb725b.pyd
 
mod.cu -LC:\\Winpython\\WinPython-64bit-3.4.4.2\\python-3.4.4.amd64\\libs 
-LC:\\Users\\David\\AppData\\Local\\Theano\\compiledir_Windows-10-10.0.10586-Intel64_Family_6_Model_94_Stepping_3_GenuineIntel-3.4.4-64\\cuda_ndarray
 
-LC:\\Winpython\\WinPython-64bit-3.4.4.2\\python-3.4.4.amd64 -lpython34 
-lcudart -lcublas -lcuda_ndarray', '[Shape_i{1}(out.w)]')


Any help is appreciated!

My theanorc file is

[global]
device = gpu
floatX = float32

[nvcc]
flags = --use-local-env --cl-version=2013


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