Strange. Can you do this to make sure one dependency is installed? conda install mkl-service
If that don't fix it, try this PR: https://github.com/Theano/Theano/pull/5544 A temporary work around is to use this THeano flag: blas.ldflags= Fred On Thu, Feb 16, 2017 at 2:11 AM Ragav Venkatesan <[email protected]> wrote: > I had a perfectly fine version of theano - libgpuarray working with a > toolbox that I am writing. I haven't updated my thenao in a while, so I > updated my theano to bleeding edge, which required an update to my > libgpuarray install also which I did. > > After updating, I am getting the following error (with a bunch of code > printed) on a piece of code that was working perfectly fine before install. > I could always roll my updates back, but any advice would help. > > Problem occurred during compilation with the command line below: > /usr/bin/g++ -shared -g -O3 -fno-math-errno -Wno-unused-label > -Wno-unused-variable -Wno-write-strings -march=haswell -mmmx -mno-3dnow > -msse -msse2 -msse3 -mssse3 -mno-sse4a -mcx16 -msahf -mmovbe -maes -mno-sha > -mpclmul -mpopcnt -mabm -mno-lwp -mfma -mno-fma4 -mno-xop -mbmi -mbmi2 > -mno-tbm -mavx -mavx2 -msse4.2 -msse4.1 -mlzcnt -mno-rtm -mno-hle -mrdrnd > -mf16c -mfsgsbase -mno-rdseed -mno-prfchw -mno-adx -mfxsr -mxsave > -mxsaveopt -mno-avx512f -mno-avx512er -mno-avx512cd -mno-avx512pf > -mno-prefetchwt1 -mno-clflushopt -mno-xsavec -mno-xsaves -mno-avx512dq > -mno-avx512bw -mno-avx512vl -mno-avx512ifma -mno-avx512vbmi -mno-clwb > -mno-pcommit -mno-mwaitx --param l1-cache-size=32 --param > l1-cache-line-size=64 --param l2-cache-size=15360 -mtune=haswell > -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -m64 -fPIC > -I/home/ragav/anaconda2/lib/python2.7/site-packages/numpy/core/include > -I/home/ragav/anaconda2/include/python2.7 > -I/home/ragav/anaconda2/lib/python2.7/site-packages/theano/gof > -L/home/ragav/anaconda2/lib -fvisibility=hidden -o > /home/ragav/.theano/compiledir_Linux-4.4--generic-x86_64-with-debian-stretch-sid-x86_64-2.7.12-64/tmpEodHXQ/a1fc55f7f6d975d0aedab336fe762088.so > /home/ragav/.theano/compiledir_Linux-4.4--generic-x86_64-with-debian-stretch-sid-x86_64-2.7.12-64/tmpEodHXQ/mod.cpp > -lmkl -lpython2.7 > /usr/bin/ld: cannot find -lmkl > collect2: error: ld returned 1 exit status > > Traceback (most recent call last): > File "pantry/tutorials/lenet.py", line 311, in <module> > lenet5 ( dataset, verbose = 2 ) > File "pantry/tutorials/lenet.py", line 133, in lenet5 > verbose = verbose > File "build/bdist.linux-x86_64/egg/yann/network.py", line 2011, in cook > File "build/bdist.linux-x86_64/egg/yann/network.py", line 1430, in > _initialize_test > File "build/bdist.linux-x86_64/egg/yann/network.py", line 1386, in > _initialize_test_classifier > File > "/home/ragav/anaconda2/lib/python2.7/site-packages/theano/compile/function.py", > line 326, in function > output_keys=output_keys) > File > "/home/ragav/anaconda2/lib/python2.7/site-packages/theano/compile/pfunc.py", > line 486, in pfunc > output_keys=output_keys) > File > "/home/ragav/anaconda2/lib/python2.7/site-packages/theano/compile/function_module.py", > line 1795, in orig_function > defaults) > File > "/home/ragav/anaconda2/lib/python2.7/site-packages/theano/compile/function_module.py", > line 1661, in create > input_storage=input_storage_lists, storage_map=storage_map) > File > "/home/ragav/anaconda2/lib/python2.7/site-packages/theano/gof/link.py", > line 699, in make_thunk > storage_map=storage_map)[:3] > File > "/home/ragav/anaconda2/lib/python2.7/site-packages/theano/gof/vm.py", line > 1063, in make_all > impl=impl)) > File > "/home/ragav/anaconda2/lib/python2.7/site-packages/theano/gof/op.py", line > 924, in make_thunk > no_recycling) > File > "/home/ragav/anaconda2/lib/python2.7/site-packages/theano/gof/op.py", line > 828, in make_c_thunk > output_storage=node_output_storage) > File > "/home/ragav/anaconda2/lib/python2.7/site-packages/theano/gof/cc.py", line > 1190, in make_thunk > keep_lock=keep_lock) > File > "/home/ragav/anaconda2/lib/python2.7/site-packages/theano/gof/cc.py", line > 1131, in __compile__ > keep_lock=keep_lock) > File > "/home/ragav/anaconda2/lib/python2.7/site-packages/theano/gof/cc.py", line > 1586, in cthunk_factory > key=key, lnk=self, keep_lock=keep_lock) > File > "/home/ragav/anaconda2/lib/python2.7/site-packages/theano/gof/cmodule.py", > line 1155, in module_from_key > module = lnk.compile_cmodule(location) > File > "/home/ragav/anaconda2/lib/python2.7/site-packages/theano/gof/cc.py", line > 1489, in compile_cmodule > preargs=preargs) > File > "/home/ragav/anaconda2/lib/python2.7/site-packages/theano/gof/cmodule.py", > line 2309, in compile_str > (status, compile_stderr.replace('\n', '. '))) > Exception: ('The following error happened while compiling the node', > CorrMM{valid, (1, 1), (1, 1)}(InplaceDimShuffle{0,3,1,2}.0, Subtensor{::, > ::, ::int64, ::int64}.0), '\n', 'Compilation failed (return status=1): > /usr/bin/ld: cannot find -lmkl. collect2: error: ld returned 1 exit status. > ', '[CorrMM{valid, (1, 1), (1, 1)}(<TensorType(float32, 4D)>, > <TensorType(float32, 4D)>)]') > > -- > > --- > You received this message because you are subscribed to the Google Groups > "theano-users" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > For more options, visit https://groups.google.com/d/optout. > -- --- You received this message because you are subscribed to the Google Groups "theano-users" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. For more options, visit https://groups.google.com/d/optout.
