> I was wondering which of the backup files can be deleted?

They're all just TiddlyWiki documents - i.e. they're self-contained, 
there are no dependencies between the individual files.

> Is there something as a plugin or macro that deletes backup files
> automatically once they are too old and/or there are too many of them

The LessBackupsPlugin should suit your needs:
     http://tiddlywiki.org/wiki/Backup

> In particular DCTableofContents does not work

Have you tried the latest version linked from here:
     http://tiddlywiki.org/wiki/Table_of_Contents_For_Individual_Tiddlers

This might come in handy:
     http://tiddlywiki.org/wiki/Troubleshooting


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