Mat, reading the exchange on the Github page you link to, it seems to me it is 
a cache issue.
I have just relaunched Chromium from the terminal with a command to disable the 
cache, and will see if that avoids the issue. If it does, fine, but it is a 
workaround and is not the way it should be.
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11 Apr 2020, 12:44 by [email protected]:

> Yes, that is a big problem if it happens (or, even worse, it happens but you 
> don't even notice). It sounds like the same issue that I report > here 
> <https://github.com/Jermolene/TiddlyWiki5/issues/4239>> .
> The way around it, which is definitely not optimal, is to hold down the Shift 
> key as the page is loaded. If it was already loaded with old version, then 
> refresh+Shiftkey.
> What system+browser are you using? I find it happens less frequently with 
> Chrome than with FF on my Win machine.
>
> <:-)
>
>
>
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