I've just updated the plugin with sorting for tag and tiddler collections, section headings, a different theme and various minor adjustments:
http://fnd.lewcid.org/misc/jQueryAPI.html
For comparison, the original demo document still uses the old version:
http://fnd.lewcid.org/tmp/tagsplorer.html

1. In the demo tiddler, when i remove a tag by clicking on it, it gets
added to the list below, which is fine.

I guess this is another case of the purpose being unclear. Hopefully the new presentation will mitigate that issue.

2. When one 'adds' a new tag in the tagsplorer, isnt it supposed to be
added to the containing tiddler's tag list?

See above.

I opted for a configuration cookie. [...] Let me know if this is a taboo solution.

Well, I think it's less than ideal, because it's a global setting. For example, I might want a version of the macro ignoring excludeLists right next to one excluding such tiddlers.
Having said that, done is better than perfect.

If using the config.options method to change variables [...]
how can I specify that when the status of the cookie changes to
refresh Display

I believe the propagateOption method takes care of this - you might wanna ask on the dev group though.

I was thinking to #add some sort orders in a similar manner

Sounds a bit like feature creep to me - but that might be because I can't quite visualize it yet.


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