I don't find your hierarchy needs at all complex - if you do some searching 
in this group's archives (
http://groups.google.com/d/msg/tiddlywiki/Ov4LjtQVWPw/YcVIb6Wni7sJ) you'll 
find this is very much a pet topic of mine, but I'm afraid I don't have 
quick and easy answers for your actual question, but hope you find the below 
somewhat helpful in a larger context.


I have been doing exactly what you're seeking for many years, but using 
Evernote rather than TW. As you're discovering, TW does let you set up the 
facility to tag anyway you like, and easily retrieve based on single tags, 
but I haven't found any canned solution that gives you good hierarchical 
summary display and navigation "out of the box". I'm sure it can be done, 
but I'm sure it would take a competent and TW-familiar javascript programmer 
a reasonable amount of time to accomplish, and of course different people 
have different ideas as to how such a scheme should work.

What I do is use Evernote for my "collection and processing" of random 
snippets from texts and the web, brainstorming notes etc, and evolved over 
time the content-specific topic tagging index terms hierarchy. Evernote's 
very very flexible and forgiving of changing meta-organizing schemes as you 
go along, there really isn't anything stopping you from setting up as many 
different ways as you like for slicing/dicing the content, the ability to 
select a sub-branch of your tag hierarchy, then do various AND/OR 
combinations simply by clicking/shift-ctrl-clicking on the other branches or 
single tags is really a thing of beauty from a UI ease-of-use POV.

Once a given topic area and it's organizational taxonomy has started to gel 
in my brain, I then start moving the content over to Tiddlywiki, which truly 
excels at cross-platform and portable storage and presentation, but I've 
found you have to have a reasonably well-developed idea of how you want the 
end-user to navigate through the data, set up a traditional, not-too-deep 
navigation hierarchy, perhaps coupled with a listing of all content-indexing 
terms for them to browse, along of course with intra-TW tiddler linking from 
within the inline content.

I really like "true hierarchical" tag navigation, where you can select a 
parent tag and all its children get selected/filtered at the same time. That 
is why I have stuck with Evernote v2.2 over the years, as when they went to 
their cloud-model newer versions, they implemented a tagging scheme that 
could be made to look hierarchical but in fact didn't work that way under 
the covers.

However there's little support and it can be difficult to find, probably 
will be issues with future OS versions, etc. So I'd advise checking out the 
current version of Evernote and see if you can make it work for you. If not 
contact me and I'll set you up with the older version to see if you want to 
go that route. Or of course feel free to ask specific questions on what I'm 
doing in TW in this area here.

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