Have you looked at Zotero?

You can download pdfs with metadata, and the metadata -- key words etc --
is saved in Zotero [1]. You can bulk download from Google Schoolar, you get
the metadata and the pdf

Menedely takes pdfs and renames them with the title of the paper: not sure
about other features it has.

I've played about with TW's text-slicer [2] and TiddlyWeb to relate
concepts and to citations. For instance, you read a paragraph, its laying
out the history of a concept. Cut and paste the concept and the citation
into TW. Its good if you have the pdf embeded in a tiddler, then cut and
paste is a lot easier.

I was wondering if TiddlyClip [4] could be refined to caputure metadata in
a similar way to the zotero browser plugin

Alex

[1] https://www.zotero.org/download/
[2] http://tiddlywiki.com/prerelease/editions/text-slicer/index.html
[3]
https://chrome.google.com/webstore/detail/zotero-connector/ekhagklcjbdpajgpjgmbionohlpdbjgc?hl=en
[4] http://tiddlyclip.tiddlyspot.com/

On 13 February 2016 at 16:35, andrew levy <andrewle...@gmail.com> wrote:

> So I have seen there have been a few attempts at developing reference
> management software with TW. But I think the one thing that's missing from
> them and in fact with all reference managers as far as I have seen, is
> extracting and utilising metadata from a pdf and then making it
> hyperlinkable. The dream scenario for me, would be to upload a PDF and the
> text is converted into a useful language my thought would be XML. In
> particular so the bibliography could be extracted and then exploited for
> hyperlinking. I would also like the means to tag highlights, quotes and
> notes so rather than it being centred around reference management its use
> is around annotation management....I think that would be the clincher So
> that I would be able to search my library of quotes and notes with boolean
> terms and each quote would contain metadata on its source so cross
> referencing would be a piddle.
>
> I have recently come across this;
>
> http://cermine.ceon.pl/index.html
>
> It allows you to upload a pdf and then extract all the data in NLM XML
> format. It's far from perfect particularly with extracting the
> bibliography, it seems to incorporate authors in the title when "and" has
> been used. But otherwise it seems the most user-friendly and light version
> of such a tool I've seen. And is written in Java. I know little about Java
> but would this mean that it would be easy to incorporate this tool in to TW?
>
> The other essential element I think to decide is how the referencing is
> managed my initial thought would be in BiBTeX. I've seen this has been
> previously mentioned but has this been fully developed for TW5? But are
> there anythoughts on perhaps a better way to code the references?
>
> thanks
>
> Andrew
>
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