So it turns out that if we modify line line 1594 in boot.js from 

tiddlers.push({tiddlers: fileTiddlers});

to 

tiddlers.push({filepath: pathname, hasMetaFile: !!metadata && 
!isTiddlerFile, tiddlers: fileTiddlers});

the files are saved to the accurate and original filename, along with a 
.meta file for non .tid files. We will need to discuss whether this is the 
approach we want, however I know feel comfortable assuming that the current 
behaviour is a bug and will open an issue.

Saq


On Thursday, June 15, 2017 at 4:11:15 PM UTC+2, Saq Imtiaz wrote:
>
> Some more configuration information that may help with debugging, as I am 
> little unsure as to what the proper location for the tiddlywiki.files file 
> is.
>
> I have tried the following:
>
>>
>> - tiddlers
>> - - notes
>> - - - mynote.txt
>> - - - tiddlywiki.files
>
>
> and
>
> - tiddlers
>> - - notes
>> - - - mynote.txt
>> - - noteconfig
>> - - - tiddlywiki.files
>
>
> Note that I specify how to load the notes directory in tiddlywiki.files 
> but allow all other tiddlers to load as usual.
>

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