> I would like to split it in 3 different parts
You should take a look at TinyTiddly:
http://www.tiddlywiki.org/wiki/TinyTiddly
However, this only separates the core JavaScript code from the HTML.
Externalizing the CSS portions might be a bit more difficult, if only
because StyleSheetColors uses tiddler slices[1] to dynamically extract
colors from the ColorPalette.
If you like, you can try to cook[2] your own TiddlyWiki based on the
standard distribution's recipes[3].
As for plugins, you could use SCRIPT tags in MarkupPreHead[4] to include
them as indivual files - but that's not guaranteed to work, as the core
provides a certain (though minimal) framework when evaluating plugin code.
A better solution might be to include those plugin tiddlers from a
separate document - but that's a tricky issue as well:
http://www.tiddlywiki.org/wiki/Including_External_Content
HTH.
-- F.
[1] http://www.tiddlywiki.org/wiki/Tiddler_Slices
[2] http://www.tiddlywiki.org/wiki/Dev:Cook
[3] http://trac.tiddlywiki.org/browser/Trunk/core/
[4] http://www.tiddlywiki.org/wiki/MarkupPreHead
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