>If I select run in terminal, a terminal screen pops up, and disappears.  If I 
run, nothing seems to happen.  

This sounds like it might be a problem with the file's permissions.  The 
execute bit needs to be set appropriately for whoever is running tn5250j.  
Check the permissions 
>ls -Al
and use chmod to set the appropriate permissions if necessary.
>chmod 555 tn5250j.script (or whatever the script name is)

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