Hi Fan Li,
it seems that the auto-complete index is not always refreshed after such
file imports. I am still investigating details and know how to improve
this for the next release, yet I wanted to give you this work-around if
it blocks your progress:
After you imported the OWL file, please go to Server Administration >
Auto-Complete Management and click Rebuild for the Graph that you
imported into. The direct link to that page from a TBC-ME installation
is http://localhost:4500/tbl/swp?_viewClass=tbladmin:AutoCompletePage.
The problem would also be resolved by a server restart.
Thanks,
Holger
On 29/07/2019 12:19, Fan Li wrote:
Hi Irene, my understanding is that relations are not removed in BFO
2.0. Instead they form a separator ontology called Relation Ontology.
Anyway I actually imported the "has member" relation through the
Information Artifact Ontology, which is built on BFO.
https://raw.githubusercontent.com/information-artifact-ontology/IAO/v2019-06-07/iao.owl
It contains the following triples:
|
<!-- http://purl.obolibrary.org/obo/RO_0002351
--><owl:ObjectPropertyrdf:about="http://purl.obolibrary.org/obo/RO_0002351";><rdfs:subPropertyOfrdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/><rdf:typerdf:resource="http://www.w3.org/2002/07/owl#IrreflexiveProperty"/><obo:IAO_0000115>has
member is a mereological relation between a collection and an
item.</obo:IAO_0000115><obo:IAO_0000119>SIO</obo:IAO_0000119><obo:RO_0001900rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/><rdfs:labelxml:lang="en">has
member</rdfs:label></owl:ObjectProperty>
|
I just created a new ontology in EDG and imported the above mentioned
iao.owl file (Import RDF with RDF/XML format). The import was
successful but unfortunately I am still not able to add a property
shape for "has member".
On Sunday, July 28, 2019 at 4:17:00 PM UTC-4, Irene Polikoff wrote:
I could not reproduce this issue.
Did you physically imported BFO using Import -> Import RDF or did
you include it using Settings -> Includes.
In either case, the autocomplete index will be updated automatically.
One difference is that if you use Import -> Import RDF, EDG will
insert missing rdfs:subclassOf relationships for any class that
has no parent. With this, classes from BFO will appear in the
class tree.
I did not find ‘has member’ property in the BFO 2.0 downloaded
from https://github.com/bfo-ontology/BFO/wiki
<https://github.com/bfo-ontology/BFO/wiki>
It has some declarations for dc:member property, but there is no
label:
dc:member
rdf:type owl:AnnotationProperty ;
.
On Jul 28, 2019, at 12:15 AM, Fan Li <[email protected]
<javascript:>> wrote:
After importing an existing ontology (e.g. BFO) into my ontology
in EDG, I see the imported classes won't appear in the
autocomplete search box (for example, sh:class). Similarly
imported object properties are not available when adding a new
property shape (see below). Meanwhile I can verify their
existence in the graph via SPARQL. So I guess perhaps the
imported triples were not added into the autocomplete index? Thanks!
<shape.jpg>
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