Yeah, we saw this last week, thanks for reporting. It's not a bug in the
applications, but something to do with ligthdm since 1.20.0-0ubuntu2 and
unity-settings-daemon.

Since this lightdm update, unity-settings-daemon in the user's session
fails to set Gtk/ShellShowsMenuBar, so menus aren't stripped out of
apps.

It's because unity-settings-daemon doesn't start the xsettings manager,
because it thinks there is one active on the system already. That
shouldn't be true, and it isn't with the lightdm change reverted so
there's probably an as-yet unknown adverse interaction there. It does
some Xish thing to check if there is one (https://bazaar.launchpad.net
/~unity-settings-daemon-team/unity-settings-
daemon/trunk/view/head:/plugins/xsettings/xsettings-manager.c#L107) -
this is the part that is no longer passing.

I noticed that the lightdm logind session now stays around in "closing"
state, suspiciously with a u-s-d process still running, but I'm not sure
why this gets in the way of the user's running X.

laney@raleigh> loginctl session-status c1
c1 - lightdm (110)
           Since: Mon 2016-11-07 09:03:54 GMT; 18min ago
          Leader: 4264
            Seat: seat0; vc7
         Display: :0
         Service: lightdm-greeter; type x11; class greeter
           State: closing
            Unit: session-c1.scope
                  ├─4544 /usr/lib/at-spi2-core/at-spi2-registryd 
--use-gnome-session
                  ├─4565 nm-applet
                  └─4567 /usr/lib/unity-settings-daemon/unity-settings-daemon

Nov 07 09:03:54 raleigh.local systemd[1]: Started Session c1 of user lightdm.
Nov 07 09:03:55 raleigh.local lightdm[4264]: 
pam_ck_connector(lightdm-greeter:session): nox11 mode, ignoring PAM_TTY :0
Nov 07 09:03:55 raleigh.local org.a11y.atspi.Registry[4526]: SpiRegistry daemon 
is running with well-known name - org.a11y.atspi.Registry
Nov 07 09:03:59 raleigh.local pulseaudio[4691]: [pulseaudio] source.c: Default 
and alternate sample rates are the same.
Nov 07 09:03:59 raleigh.local pulseaudio[5730]: [pulseaudio] pid.c: Daemon 
already running.
Nov 07 09:04:20 raleigh.local pulseaudio[4691]: [pulseaudio] bluez5-util.c: 
GetManagedObjects() failed: org.freedesktop.DBus.Error.TimedOut: Failed to 
activate service 'org.bluez': timed out
Nov 07 09:21:33 raleigh.local lightdm[4264]: pam_unix(lightdm-greeter:session): 
session closed for user lightdm


** Package changed: nautilus (Ubuntu) => lightdm (Ubuntu)

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You received this bug notification because you are a member of Ubuntu
Touch seeded packages, which is subscribed to lightdm in Ubuntu.
https://bugs.launchpad.net/bugs/1639658

Title:
  Menu bugs in Files (inside window, gaps in the menu entries, two menus
  in Global Menu)

Status in lightdm package in Ubuntu:
  New

Bug description:
  A few bugs in Files' menus:
  - A Files menu is displayed inside the window as well as...
  - Two essentially identical menu entries in the Global Menu
  - Strangely enlarged dividers in the menu inside the Files window (see 
attached screenshot)

  Similar bugs in Terminal and Screenshot: bug 1639655, bug 1639659

  Similar bugs also in Videos (totem) 3.22.0-2ubuntu1, Archive Manager
  (file-roller) 3.22.1-0ubuntu1, System Settings (unity-control-center)
  15.04.0+16.10.2016, Calculator (gnome-calculator) 3.22.1-1ubuntu1,
  Character Map (gucharmap) 9.0.1-1, Disks (gnome-disk-utility)
  3.22.0-1ubuntu1, Cheese 3.22.0-1ubuntu1, Disk Usage Analyser (baobab)
  3.22.0-1ubuntu1, Document Viewer (evince) 3.22.1-2ubuntu1, Image
  Viewer (eog) 3.20.5-1, Mahjongg (gnome-mahjongg) 3.22.0-1, Mines
  (gnome-mines) 3.22.1-1, Remmina Remote Desktop Client 1.1.2-3ubuntu2,
  Rhythmbox 3.4.1-1ubuntu1, Shotwell 0.22.0+git20160108, Simple Scan
  3.22.0.1-0ubuntu2, System Monitor 3.22.0-1, Transmission
  (transmission-gtk) 2.92-1ubuntu1, Ubuntu Software
  3.20.1+git20161013... probably others in the Ubuntu repositories but
  these are the default applications suffering these bugs.

  Computer info:
  VirtualBox Graphical User Interface Version 5.1.6_Ubuntu r110634
  (I don't have access to spare hardware to test on at the moment)
  Allocated 2GB RAM
  Host OS: Ubuntu 16.10 64-bit
  Lenovo ThinkPad X201

  ProblemType: Bug
  DistroRelease: Ubuntu 17.04
  Package: nautilus 1:3.20.3-1ubuntu4
  ProcVersionSignature: Ubuntu 4.8.0-26.28-generic 4.8.0
  Uname: Linux 4.8.0-26-generic x86_64
  ApportVersion: 2.20.3-0ubuntu8
  Architecture: amd64
  CurrentDesktop: Unity
  Date: Mon Nov  7 00:16:32 2016
  GsettingsChanges: b'org.gnome.nautilus.window-state' b'geometry' 
b"'890x550+390+24'"
  InstallationDate: Installed on 2016-10-10 (27 days ago)
  InstallationMedia: Ubuntu 16.10 "Yakkety Yak" - Alpha amd64 (20161008)
  SourcePackage: nautilus
  UpgradeStatus: Upgraded to zesty on 2016-11-06 (0 days ago)
  usr_lib_nautilus: gnome-terminal 3.20.2-1ubuntu5

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