DNSMASQ runs as user nobody per design of dnsmasq devs.
from the manpage:

-u, --user=<username>
    Specify the userid to which dnsmasq will change after startup. Dnsmasq must 
normally be started as root, but it will drop root privileges after startup by 
changing id to another user. Normally this user is "nobody" but that can be 
over-ridden with this switch.

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https://bugs.launchpad.net/bugs/1562111

Title:
  network-manager no longer restarts dnsmasq

Status in network-manager package in Ubuntu:
  New

Bug description:
  restarting Network Manager does not have any effect on it's child
  dnsmasq (nor does stopping and starting)

  ubuntu@ubuntu:~$ pidof dnsmasq
  2355
  ubuntu@ubuntu:~$ sudo systemctl restart NetworkManager
  ubuntu@ubuntu:~$ pidof dnsmasq
  2355

  This problem started in 15.10 and still exists in 16.04 beta2 - it
  works as expected in 14.04.

  The upshot is you cannot load any extra dnsmasq configuration set in
  the conf dir /etc/NetworkManager/dnsmasq.d/ because dnsmasq doesn't
  get restarted.

  
  (As a related issue dnsmasq is also running as 'nobody' and I don't think it 
should, Bug #1105493)

  ProblemType: Bug
  DistroRelease: Ubuntu 16.04
  Package: network-manager 1.0.4-0ubuntu10
  ProcVersionSignature: Ubuntu 4.4.0-15.31-generic 4.4.6
  Uname: Linux 4.4.0-15-generic x86_64
  ApportVersion: 2.20-0ubuntu3
  Architecture: amd64
  CurrentDesktop: Unity
  Date: Fri Mar 25 18:13:33 2016
  IfupdownConfig:
   # interfaces(5) file used by ifup(8) and ifdown(8)
   auto lo
   iface lo inet loopback
  IpRoute:
   default via 192.168.0.1 dev wlp4s0  proto static  metric 600 
   169.254.0.0/16 dev wlp4s0  scope link  metric 1000 
   192.168.0.0/24 dev wlp4s0  proto kernel  scope link  src 192.168.0.107  
metric 600
  NetworkManager.state:
   [main]
   NetworkingEnabled=true
   WirelessEnabled=true
   WWANEnabled=true
   WimaxEnabled=true
  ProcEnviron:
   TERM=xterm-256color
   PATH=(custom, no user)
   XDG_RUNTIME_DIR=<set>
   LANG=en_US.UTF-8
   SHELL=/bin/bash
  SourcePackage: network-manager
  UpgradeStatus: No upgrade log present (probably fresh install)
  nmcli-con:
   NAME                UUID                                  TYPE             
TIMESTAMP   TIMESTAMP-REAL                   AUTOCONNECT  AUTOCONNECT-PRIORITY  
READONLY  DBUS-PATH                                   ACTIVE  DEVICE  STATE     
 ACTIVE-PATH                                        
   Wired connection 1  53d8bcbd-4047-4705-904a-60eef9d821c1  802-3-ethernet   
1458929440  Fri 25 Mar 2016 06:10:40 PM UTC  yes          0                     
no        /org/freedesktop/NetworkManager/Settings/1  no      --      --        
 --                                                 
   Mosquito            a88863fb-196e-4000-8103-880e0698d514  802-11-wireless  
1458929448  Fri 25 Mar 2016 06:10:48 PM UTC  yes          0                     
no        /org/freedesktop/NetworkManager/Settings/0  yes     wlp4s0  activated 
 /org/freedesktop/NetworkManager/ActiveConnection/0
  nmcli-dev:
   DEVICE   TYPE      STATE        DBUS-PATH                                  
CONNECTION  CON-UUID                              CON-PATH                      
                     
   wlp4s0   wifi      connected    /org/freedesktop/NetworkManager/Devices/1  
Mosquito    a88863fb-196e-4000-8103-880e0698d514  
/org/freedesktop/NetworkManager/ActiveConnection/0 
   enp0s25  ethernet  unavailable  /org/freedesktop/NetworkManager/Devices/2  
--          --                                    --                            
                     
   lo       loopback  unmanaged    /org/freedesktop/NetworkManager/Devices/0  
--          --                                    --
  nmcli-nm: Error: command ['nmcli', '-f', 'all', 'nm'] failed with exit code 
2: Error: Object 'nm' is unknown, try 'nmcli help'.

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