I believe this is fixed since then. Please reopen if you still observe
the issue.

** Changed in: unattended-upgrades (Ubuntu)
       Status: Confirmed => Fix Released

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https://bugs.launchpad.net/bugs/1733142

Title:
  unattended-upgrades 0.90ubuntu0.8 spit ERROR: os.close(4): [Errno 9]
  Bad file descriptor

Status in unattended-upgrades package in Ubuntu:
  Fix Released

Bug description:
  Description:
  unattended-upgrades could execute its task successfully, but gives the error 
message during the task.

  $ lsb_release -a
  Description:  Ubuntu 16.04.3 LTS
  Codename:     xenial

  $ uname -a
  Linux  4.4.0-98-generic #121-Ubuntu SMP Tue Oct 10 14:24:03 UTC 2017 x86_64 
x86_64 x86_64 GNU/Linux

  dpkg -l unattended-upgrades
  Version: 0.90ubuntu0.8

  Reduplication procedure:
  * Available packages for unattended-upgrades to upgrade
  * sudo unattended-upgrades
  * Wait for unattended-upgrades to finish its task
  * check the console message:

  ... ...
  marking libmircommon5 for remove
  Packages that are auto removed: 'libmircommon5'
  ERROR: os.close(4): [Errno 9] Bad file descriptor
  ERROR: os.close(5): [Errno 9] Bad file descriptor
  ERROR: os.close(6): [Errno 9] Bad file descriptor
  ERROR: os.close(150): [Errno 9] Bad file descriptor

  Sometimes the os.close error is:
  Writing dpkg log to 
'/var/log/unattended-upgrades/unattended-upgrades-dpkg.log'
  ERROR: os.close(4): [Errno 9] Bad file descriptor

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