I am also logging in to Trac via web interface, and I am able to use
AccountManagerPlugin to add new users.

If Trac.ini is correctly configured, you should be able to open the
web admin panel, choose Accounts/Users section and to the right two
sections are there to handle accounts: Add Account and Change
Password.

Making changes there should affect the password file.

I paste my configuration to serve as an example (which uses htdigest),
hope this helps somewhat on the way to solve your problem:

[account-manager]
force_passwd_change = true
generated_password_length = 8
group_file = <path to HTTP user groups file>
hash_method = HtDigestHashMethod
htdigest_realm = <something>
password_file = <path to Apaches passwd file>
password_store = HtDigestStore
persistent_sessions = true

[components]
acct_mgr.admin.accountmanageradminpage = enabled
acct_mgr.api.* = enabled
acct_mgr.htfile.abstractpasswordfilestore = enabled
acct_mgr.htfile.htdigeststore = enabled
acct_mgr.pwhash.htdigesthashmethod = enabled
acct_mgr.web_ui.AccountModule = enabled

With best regards,
Mikael Relbe (mrelbe)

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