Looks like I've found the solution,
migrate is using Alembic, and there's a file called
<project>\migration\env.py that defines where to look for the database
connection string, I've edited the file a bit to search for env var called
$DATABASE_URL, for now my code looks like this:
def run_migrations_online():
database_url = os.environ.get('DATABASE_URL')
if database_url:
configData = {"sqlalchemy.url":database_url}
else:
configData = config.get_section(config.config_ini_section)
engine = engine_from_config(
configData,
prefix='sqlalchemy.',
poolclass=pool.NullPool)
....
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