There's a few ways to accomplish this...the way that comes to mind is:
##########################################################
import glob
files = glob.glob("/path/to/director/*.dml") # assuming you want only .dml
def spot(file):
'''search for intensity spots and report them to an output file'''
f1 = open('my_intensity_file.dml','r')
int = f1.read().split('\n')
my_vals = intParser(int)
intParser return a list
f2 = open('myvalues.txt','w') # you will want to change this to output mult
for line in my_vals: # files, or to at least append instead of overwriting
f2.write(line)
f2.write('\n')
f2.close()
def main():
for each in files:
spot(each)
main()
##########################################################
Basically, turn the parsing into a function, then create a list of files, and
perform the parsing on each file. glob() lets you grab a whole list of files
matching the wildcard just like if you typed "ls *.dml" or whatever into a
command prompt. There wasn't too much info about specifically how you needed
this to work, so this is a rough sketch of what you want. Hopefully it helps.
-Jay
On Sunday 30 January 2005 03:03 am, kumar s wrote:
> Hello.
>
> I wrote a parser to parse spot intensities. The input
> to this parser i am giving one single file
>
> f1 = open('my_intensity_file.dml','r')
> int = f1.read().split('\n')
>
> my_vals = intParser(int)
>
> intParser return a list
> f2 = open('myvalues.txt','w')
> for line in my_vals:
> f2.write(line)
> f2.write('\n')
>
> f2.close()
>
>
> The problem with this approach is that, i have to give
> on file per a run. I have 50 files to pare and i want
> to do that in one GO. I kepy those 50 files in one
> directory. Can any one suggest an approach to automate
> this process.
>
> I tried to use f1 = stdin(...) it did not work. i dont
> know , possible is that i am using incorrect syntax.
>
> Any suggestions.
>
> Thank you.
> K
>
>
>
>
>
>
>
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