For graphing you can't really beat Scipy.
On 4/22/06, Srinivas Iyyer <[EMAIL PROTECTED]> wrote: > Dear group, > I am happy that I am slowly finding pyhonian projects > related to my research area. > > Problem: > 1. I have a database of human gene coordinates on > chromosomes. > 2. I have gene expression data from my lab concerning > the genes I mentioned above. > > 3. I want to visualize expression data laid on > chromosomes. > > Eg. > Coordinates: > Chr Gene From To Exon > 1 x 100 120 exon:1 > 1 x 200 250 exon:2 > 1 x 350 450 exon:3 > > > Expression data: > > IDent sample Chr From To Expression > value > xxx_at lung 1 110 120 100.35 > x_s_at heart 1 225 250 124.35 > x_a_at eye 1 375 400 146.35 > > What I want: > > I want to have a simpler window, that would connect to > my database. I want to give a gene, this python/tk > interfacce or what ever would query the database > draw a graph of gene according the exons and plot the > values. > > -------_______----------_______------- > > -- : exon > __: regions that are not exons, introns. > > > > My questions to Tutor/BioPython forums: > > 1. What should I decide to work on a. Py/Tk framework > b. python imaging libraries etc. > > 2. I do not want to impress any one with this work, > except that it should help me understand the > relationships as the number game in the tables above > is highly confusing. So, a working version that > accurately plots the expression values for as many > samples I have > > 3. Are there any available modules to jump-start? or > do I have to create some from scratch. which would be > a problem because I am between novice to mediocral > level of python programing. > > 4. Any ideas/suggestions/pointers are highly > appreciated. > > thanks > Sri > > __________________________________________________ > Do You Yahoo!? > Tired of spam? Yahoo! Mail has the best spam protection around > http://mail.yahoo.com > _______________________________________________ > Tutor maillist - Tutor@python.org > http://mail.python.org/mailman/listinfo/tutor > _______________________________________________ Tutor maillist - Tutor@python.org http://mail.python.org/mailman/listinfo/tutor
