Hi, Mark.
I've had a similar issue and I found the reason. In my case my root page was
defined as "root" (globe icon in page-tree), it was a shortcut to first
subpage, which contained a rootlevel TS template - this was blocking TS
configuration to be read and that's why nothing appeared in FCE dropdown.
So, I changed my structure: moved rootlevel TS template to my root page
(globe icon) and after that FCE appeared perfectly in dropdown.
Hope that helps.
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