This seems to be related to the bind-address in  /etc/mysql/my.cnf.  I
had changed mine to my ip address so the other front ends could access
the database.  It seems that root is somehow prevented from logging in
when the ip address is different.

I replaced the bind-address with 127.0.0.1 and sudo dpkg-reconfigure
mythtv-database worked fine (well, no output so I assume it worked.)

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mythtv-database configuration cannot connect to MySQL database
https://bugs.launchpad.net/bugs/109950
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