I don't think this is a compiz issue or a video driver issue, it's the theme or
application explicitly choosing to be transparent by using RGBA colours.
Adding gnome-system-monitor back, because my guess is that it lies there since
nothing else is doing this.
** Changed in: compiz (Ubuntu)
Status: Incomplete => Confirmed
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gnome-system-monitor window is semi-transparent when using compiz
https://bugs.launchpad.net/bugs/274461
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