I just reinstalled all my local apps--Lightscribe, RealPlayer & Nero.  I
asked System Cleaner to remove only Nero by unchecking all the other
apps. Instead, it removed all the local items--the Lightscribe apps are
installed in /opt as is RealPlayer--I would think that System Cleaner
should ask before removing anything installed in /opt.  I tried to
install updated System Cleaner before this--there was no version change
even after adding your PPA.

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System Cleaner Does Not Refresh Following Cleaning
https://bugs.launchpad.net/bugs/274715
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