I can confirm that running without --loose-bindings fixes the problem.
(A web site I'm working on with lots of mouse-over/hover actions seems
to have 100% reproducibility of this problem.)

I disabled --loose-bindings by commenting out lines 340-344 in
/usr/bin/compiz (which really is a shell script). This is not
recommended unless you know what you are doing...

Unlike ®om, I don't notice any significant slowdown, though. Then again,
I run compiz with a quite small number of plugins and animations, I
mostly just use it to get the GPU to do stuff it does better than the
CPU (like moving windows), and as a bonus, I get more eye candy in the
window decorations (using emerald). ;)

-- 
Screen refresh problems with nvidia on intrepid
https://bugs.launchpad.net/bugs/269904
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