i have the ubuntu thunderbird package from ubuntu, it's possible at one point in the past i ran thunderbird from mozilla.org but i don't think so.
i only have a .mozilla-thunderbird folder in my home directory.
~$ ls -a | grep thunder
=> .mozilla-thunderbird
** Changed in: beagle (Ubuntu)
Status: Needs Info => Unconfirmed
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doesn't index thunderbird mails
https://launchpad.net/bugs/64662
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