I suspect that this is a race condition between synaptic read the
package cache and packagekit. Packagekit gets a
org.freedesktop.PackageKit.StateHasChanged "cache-update" signal when
synaptic finishes its reload operation. This is a bug that seems to be
caused by improper locking.

I would welcome if you could check if you have packagekit installed when
the error happens.

-- 
E: The package cache file is corrupted E: _cache->open() failed, please report.
https://bugs.launchpad.net/bugs/257639
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