here's my workaround

cp /etc/apt/sources.list /etc/apt/sources.list.backup
insert=`sed -e "s/^A.* \"//; s/\";$// ; s,/$,," /etc/apt/apt.conf`
sed -i -e "s,http://,$insert/,"; /etc/apt/sources.list
cat /etc/apt/sources.list
mv /etc/apt/apt.conf /etc/apt/apt.conf.proxy
update-manager -d -c
cp /etc/apt/sources.list.backup /etc/apt/sources.list
mv /etc/apt/apt.conf.proxy /etc/apt/apt.conf

inserts the proxy bit from apt.conf into the sources.list until update-
manager is finished.

-- 
When apt-cacher is used, Update-Manger fails (not #78673 duplicate)
https://bugs.launchpad.net/bugs/113658
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