I think I found the root of this bug (at least for me).

It's related to sound. I noticed that the increase number of the FD
happens when the sound is not working. The pipes listed in lsof are to
the sound system.

I think it's related to flash-plugin (always the closed source!).

I'll take a deeper look.

-- 
Pidgin randomly crashes
https://bugs.launchpad.net/bugs/298820
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