I figured out what happened: popstate.dat lost some records, apparently
this happens when you run out of disk space. Unfortunately there's not
really any way to rebuild popstate.dat based on inbox contents (guess
that's not going to work anyway with all the locally removed mail) so I
re-downloaded the messages Thunderbird wanted to download and deleted
them again. Now popstate.dat is complete again.

-- 
Message is partially lost if disk is full
https://bugs.launchpad.net/bugs/23302
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