I have attempted to reproduce the problem where Grub cannot be installed
on the root filesystem of the new Ubuntu instance. I installed a first
instance on a new disk. The installer proceeded with the installation of
Grub. This consists of the MBR (first sector on the disk) which invokes
the grub files on /boot/grub.

I installed a second instance of Ubuntu on additional partitions. This
time the installer had detected the first instance and asked me if I
want to install Grub or not. I declined and proceeded to install it on
the same partition where I am installing Ubuntu. I did get the error
that Grub could not be installed, just like you did. The installer
allowed me to go back and try again. I realized I had the incorrect grub
numbering for the partition. The logical partitions starts at (hd0,4)
regardless of how many primary partitions are created. If you have
(hd0,0) as a primary partition followed by 6 logical partitions, the
second partition will be (hd0,4) and not (hd0,1).

I was able to install Grub on the second instance. The MBR on the disk
was still loading the grub files from the first instance. All I need to
do is to add an entry in menu.lst for the second instance.

BugSquad

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Cannot install grub into root partition
https://bugs.launchpad.net/bugs/63869
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