OK, so an easy fix, well work around

store the keys outside of $HOME and re-configure /etc/ssh/sshd_config

Add say :

AuthorizedKeysFile      /etc/authorized_keys

restart sshd

now you can ssh with keys, but when you do $HOME is STILL encrypted.

from there su <user> and it decrypts

Long work around I know ;)

-- 
Encrypted home prevents ssh access with keys
https://bugs.launchpad.net/bugs/319909
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